SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): oocyte physiology variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <4>
+ + 2:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ 1:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|66|17)
+ 1:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|66|17)
0:   oocyte physiology variant [WBPhenotype:0001424] <3>(14|14) (15|7|1)
- 1:   receptor mediated endocytosis defective [WBPhenotype:0001425](12|11) (13|6|1)
- 1:   sperm recruitment variant [WBPhenotype:0001823](0|0) (0|0|0)
- 1:   uptake of yolk defective [WBPhenotype:0001762](0|1) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Class II aaRS ABD-related0.00000002712Direct
F1F0 ATP synthase subunit C0.000001269Direct
ARM repeat0.00002427Direct
Class II aaRS and biotin synthetases0.00006923Direct
Sm-like ribonucleoproteins0.0002667Direct
GroEL equatorial domain-like0.0002848Direct
GroEL-intermediate domain like0.0002848Direct
ValRS/IleRS/LeuRS editing domain0.000986Direct
GroEL apical domain-like0.0009907Direct
DNA ligase/mRNA capping enzyme, catalytic domain0.004411Inherited
CAD & PB1 domains0.004411Inherited
Translation proteins0.0177Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.04362Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
14-3-3 protein0Direct
F1F0 ATP synthase subunit C0.000002213Direct
Anticodon-binding domain of Class II aaRS0.00003418Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00003561Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00003561Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.00005384Direct
Group II chaperonin (CCT, TRIC), apical domain0.0002221Direct
Actin/HSP700.0004308Direct
ValRS/IleRS/LeuRS editing domain0.0007754Direct
Pumilio repeat0.002849Inherited
Armadillo repeat0.01343Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.02096Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.03771Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
14-3-3 protein0Direct
Class II aaRS ABD-related0.00000002184Direct
F1F0 ATP synthase subunit C0.000001035Direct
ARM repeat0.00001992Direct
Class II aaRS and biotin synthetases0.00005704Direct
Sm-like ribonucleoproteins0.0002209Direct
GroEL-intermediate domain like0.000236Direct
GroEL equatorial domain-like0.000236Direct
ValRS/IleRS/LeuRS editing domain0.0008264Direct
GroEL apical domain-like0.0008304Direct
DNA ligase/mRNA capping enzyme, catalytic domain0.003752Inherited
CAD & PB1 domains0.003752Inherited
Zinc beta-ribbon0.01426Inherited
Translation proteins0.01536Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0386Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.00001899Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.00001899Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000236Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000236Direct
    50677,52374
  • 50677 - ValRS/IleRS/LeuRS editing domain
  • 52374 - Nucleotidylyl transferase
  • 0.0008264Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.0008521Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.02431Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000236Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)