SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): cytoplasmic appearance variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + + 3:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
+ + 2:   cell component morphology variant [WBPhenotype:0002089] <17>(84|85) (84|42|9)
+ 1:   cell organization biogenesis variant [WBPhenotype:0010002] <5>(40|43) (41|18|4)
0:   cytoplasmic appearance variant [WBPhenotype:0001427] <2>(6|6) (6|2|0)
- 1:   cytoplasmic appearance defective early emb [WBPhenotype:0000769] <2>(6|6) (6|2|0)
- 1:   granules cytoplasm [WBPhenotype:0001429](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
POZ domain0.000000001163Direct
Cyclin-like0.0002769Direct
Nucleic acid-binding proteins0.002137Inherited
P-loop containing nucleoside triphosphate hydrolases0.03497Inherited
WD40 repeat-like0.2236Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
BTB/POZ domain0.0000000001065Direct
Extended AAA-ATPase domain0.0002027Direct
Cyclin0.0002907Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.006574Inherited
WD40-repeat0.09796Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
POZ domain0.0000000009236Direct
Cyclin-like0.0002279Direct
Nucleic acid-binding proteins0.001794Inherited
P-loop containing nucleoside triphosphate hydrolases0.03078Inherited
WD40 repeat-like0.2067Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.0002279Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)