SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): chemotaxis variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + + + 5:   organism physiology variant [WBPhenotype:0000576] <10>(355|415) (355|191|56)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + + 4:   organism homeostasis metabolism variant [WBPhenotype:0000577] <17>(346|406) (348|189|55)
+ + + 3:   organism environmental stimulus response variant [WBPhenotype:0000738] <16>(115|103) (118|51|16)
+ + + 3:   behavior variant [WBPhenotype:0000517] <2>(133|132) (134|53|20)
+ + 2:   organism behavior variant [WBPhenotype:0000525] <21>(133|132) (134|53|20)
+ + 2:   chemosensory behavior variant [WBPhenotype:0001049] <3>(20|20) (20|5|0)
+ + 2:   chemical response variant [WBPhenotype:0000523] <11>(65|58) (66|25|6)
+ 1:   chemosensory response variant [WBPhenotype:0001040] <3>(20|20) (20|5|0)
+ 1:   locomotion variant [WBPhenotype:0000643] <9>(74|80) (74|32|15)
+ 1:   movement variant [WBPhenotype:0001206] <9>(65|65) (65|25|9)
0:   chemotaxis variant [WBPhenotype:0001434] <2>(20|19) (20|5|0)
- 1:   negative chemotaxis variant [WBPhenotype:0000481] <3>(8|6) (8|1|0)
- 1:   positive chemotaxis variant [WBPhenotype:0000635] <3>(13|13) (13|4|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Transducin (heterotrimeric G protein), gamma chain0Direct
Periplasmic binding protein-like I0.00000000000008446Direct
Nucleotide cyclase0.00000000001718Direct
Transducin (alpha subunit), insertion domain0.00000000001718Direct
Protein kinase-like (PK-like)0.00000006915Direct
Periplasmic binding protein-like II0.000005593Direct
Glutathione synthetase ATP-binding domain-like0.0001182Direct
cAMP-binding domain-like0.0001182Direct
Regulator of G-protein signaling, RGS0.0002505Direct
Ankyrin repeat0.0005315Direct
Voltage-gated potassium channels0.005321Inherited
TPR-like0.04479Inherited
Cysteine-rich domain0.04863Inherited
HLH, helix-loop-helix DNA-binding domain0.06125Inherited
Multidrug efflux transporter AcrB transmembrane domain0.1371Inherited
EGF/Laminin0.1371Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.2095Inherited
WD40 repeat-like0.2206Inherited
Nicotinic receptor ligand binding domain-like0.2281Inherited
PH domain-like0.6965Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Transducin (heterotrimeric G protein), gamma chain0Direct
Transducin (alpha subunit), insertion domain0.00000000002674Direct
Adenylyl and guanylyl cyclase catalytic domain0.00000000002674Direct
L-arabinose binding protein-like0.0000000005526Direct
Protein kinases, catalytic subunit0.0000001185Direct
G proteins0.000002373Direct
Phosphate binding protein-like0.000005565Direct
cAMP-binding domain0.0001182Direct
Regulator of G-protein signaling, RGS0.0003982Direct
Ankyrin repeat0.001261Inherited
PLC-like (P variant)0.004279Inherited
Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)0.04996Inherited
HLH, helix-loop-helix DNA-binding domain0.06266Inherited
Voltage-gated potassium channels0.08052Inherited
Multidrug efflux transporter AcrB transmembrane domain0.11Inherited
Pleckstrin-homology domain (PH domain)0.1116Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.224Inherited
Nicotinic receptor ligand binding domain-like0.224Inherited
WD40-repeat0.3169Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Transducin (heterotrimeric G protein), gamma chain0Direct
Periplasmic binding protein-like I0.00000000000006682Direct
Transducin (alpha subunit), insertion domain0.00000000001367Direct
Nucleotide cyclase0.00000000001367Direct
Protein kinase-like (PK-like)0.00000005578Direct
Periplasmic binding protein-like II0.000004575Direct
cAMP-binding domain-like0.00009767Direct
Glutathione synthetase ATP-binding domain-like0.00009767Direct
Regulator of G-protein signaling, RGS0.0002075Direct
Ankyrin repeat0.0004422Direct
Voltage-gated potassium channels0.004535Inherited
TPR-like0.03965Inherited
Cysteine-rich domain0.04314Inherited
HLH, helix-loop-helix DNA-binding domain0.05455Inherited
EGF/Laminin0.1251Inherited
Multidrug efflux transporter AcrB transmembrane domain0.1251Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.1933Inherited
WD40 repeat-like0.204Inherited
Nicotinic receptor ligand binding domain-like0.2112Inherited
PH domain-like0.6759Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
56112,55073
  • 56112 - Protein kinase-like (PK-like)
  • 55073 - Nucleotide cyclase
  • 0Direct
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00000000001367Direct
    50978,50978
  • 50978 - WD40 repeat-like
  • 50978 - WD40 repeat-like
  • 0.0003572Direct
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.01796Inherited
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.1933Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)