SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): mRNA export variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|69)
+ + + + + + 6:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|57)
+ + + + + 5:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|56)
+ + + + + 5:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ + + + 4:   cell homeostasis metabolism variant [WBPhenotype:0000585] <12>(60|54) (60|23|12)
+ + + + 4:   organism metabolism processing variant [WBPhenotype:0000027] <25>(178|190) (182|87|26)
+ + + 3:   gene expression variant [WBPhenotype:0000717] <11>(127|139) (131|64|20)
+ + + 3:   organelle metabolism variant [WBPhenotype:0001283] <3>(1|2) (1|0|0)
+ + 2:   RNA expression variant [WBPhenotype:0000113] <10>(20|16) (20|5|0)
+ + 2:   nucleocytoplasmic transport defective [WBPhenotype:0001705] <2>(1|1) (1|0|0)
+ 1:   mRNA expression variant [WBPhenotype:0000114] <4>(8|9) (8|2|0)
+ 1:   nuclear export defective [WBPhenotype:0001706] <2>(1|1) (1|0|0)
0:   mRNA export variant [WBPhenotype:0001568](1|1) (1|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
RNA-binding domain, RBD0.000000006408Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Canonical RBD0.0000009181Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
RNA-binding domain, RBD0.000000005104Direct


Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)