SUPERFAMILY 1.75 HMM library and genome assignments server

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Worm Phenotype (WP): anchor cell invasion variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <4>
+ + + + 4:   development variant [WBPhenotype:0000518] <7>(506|577) (506|246|68)
+ + + 3:   organ system development variant [WBPhenotype:0000530] <10>(78|72) (80|31|12)
+ + 2:   reproductive system development variant [WBPhenotype:0000624] <10>(47|39) (48|20|8)
+ 1:   vulva uterus connection defective [WBPhenotype:0000283] <2>(10|8) (10|6|3)
0:   anchor cell invasion variant [WBPhenotype:0001652](10|8) (10|6|3)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Immunoglobulin0Direct
Fibronectin type III0.00000000006842Direct
Plexin repeat0.000000002531Direct
Sema domain0.000000002531Direct
Integrin domains0.00000004064Direct
Intermediate filament protein, coiled coil region0.00001147Direct
Cadherin-like0.00004419Direct
Cystine-knot cytokines0.0000945Direct
EGF/Laminin0.0002607Direct
TSP-1 type 1 repeat0.0007958Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Integrin domains0Direct
I set domains0.0000000001224Direct
Fibronectin type III0.0000000003835Direct
Sema domain0.0000000008943Direct
Plexin repeat0.000000005257Direct
Transforming growth factor (TGF)-beta0.0000003355Direct
Intermediate filament protein, coiled coil region0.00001939Direct
Cadherin0.00002854Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Immunoglobulin0Direct
Fibronectin type III0.00000000005452Direct
Plexin repeat0.000000002028Direct
Sema domain0.000000002028Direct
Integrin domains0.00000003275Direct
Intermediate filament protein, coiled coil region0.00000939Direct
Cadherin-like0.00003638Direct
Cystine-knot cytokines0.00007798Direct
EGF/Laminin0.0002159Direct
TSP-1 type 1 repeat0.0006658Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0Direct
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0000000006379Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.00000003275Direct
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.000002106Direct
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.00000939Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00002904Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.000000000006706Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.00000008019Direct
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.00000939Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)