SUPERFAMILY 1.75 HMM library and genome assignments server

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Worm Phenotype (WP): cadmium response variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <4>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <7>(489|563) (489|241|65)
+ + + + 4:   organism physiology variant [WBPhenotype:0000576] <10>(357|420) (358|193|57)
+ + + 3:   organism homeostasis metabolism variant [WBPhenotype:0000577] <17>(347|410) (350|191|56)
+ + 2:   organism environmental stimulus response variant [WBPhenotype:0000738] <16>(115|103) (118|52|16)
+ 1:   metal response variant [WBPhenotype:0000591] <15>(12|13) (13|10|5)
0:   cadmium response variant [WBPhenotype:0001653] <2>(9|10) (10|9|5)
- 1:   cadmium hypersensitive [WBPhenotype:0001655](7|7) (8|7|3)
- 1:   cadmium resistant [WBPhenotype:0001654](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
ABC transporter transmembrane region0.00000000000004019Direct
Cation efflux protein cytoplasmic domain-like0.0000008888Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.000006963Direct
Cytochrome P4500.000009242Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.00001137Direct
HSP20-like chaperones0.00001826Direct
GST C-terminal domain-like0.06922Inherited
Cation efflux protein transmembrane domain-like0.2528Inherited
Thioredoxin-like0.4168Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
ABC transporter transmembrane region0.00000000000004905Direct
ABC transporter ATPase domain-like0.0000000004154Direct
Cation efflux protein transmembrane domain-like0.00000006837Direct
Cation efflux protein cytoplasmic domain-like0.0000004493Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.000005832Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.00001676Direct
Cytochrome P4500.00002435Direct
Actin/HSP700.0006537Direct
Glutathione S-transferase (GST), C-terminal domain0.0949Inherited
Glutathione S-transferase (GST), N-terminal domain0.0949Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
ABC transporter transmembrane region0.00000000000003176Direct
Cation efflux protein cytoplasmic domain-like0.0000007228Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.000005695Direct
Cytochrome P4500.000007561Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.000009304Direct
HSP20-like chaperones0.00001497Direct
Actin-like ATPase domain0.001901Inherited
GST C-terminal domain-like0.06187Inherited
Cation efflux protein transmembrane domain-like0.2351Inherited
Thioredoxin-like0.3955Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
90123,52540
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00000000000003176Direct
    52540,90123
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.00000006999Direct
    161111,160240
  • 161111 - Cation efflux protein transmembrane domain-like
  • 160240 - Cation efflux protein cytoplasmic domain-like
  • 0.0000007228Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.000003229Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.000005695Direct
    56436,49854
  • 56436 - C-type lectin-like
  • 49854 - Spermadhesin, CUB domain
  • 0.0006734Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.001112Inherited
    56436,56436
  • 56436 - C-type lectin-like
  • 56436 - C-type lectin-like
  • 0.001256Inherited
    52833,47616
  • 52833 - Thioredoxin-like
  • 47616 - GST C-terminal domain-like
  • 0.06187Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    90123,52540,90123
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.00000006999Direct
    52540,90123,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00000006999Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.000003229Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.000005695Direct
    56436,56436,49854
  • 56436 - C-type lectin-like
  • 56436 - C-type lectin-like
  • 49854 - Spermadhesin, CUB domain
  • 0.0002638Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)