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Worm Phenotype (WP): vesicle organization variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + 2:   Variant [WBPhenotype:0000886] <2>
+ + 2:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
+ 1:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ 1:   cell component morphology variant [WBPhenotype:0002089] <17>(84|85) (84|42|9)
0:   vesicle organization variant [WBPhenotype:0001671] <2>(15|13) (15|5|1)
- 1:   vesicle morphology variant [WBPhenotype:0001323] <3>(13|12) (13|5|1)
- 1:   vesicle number variant [WBPhenotype:0001332] <1>(0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Histone-fold0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL-intermediate domain like0.0000001615Direct
GroEL equatorial domain-like0.0000001615Direct
GroEL apical domain-like0.0000003883Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000003011Direct
Riboflavin synthase domain-like0.000003548Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.000003548Direct
F1F0 ATP synthase subunit C0.00001126Direct
ARM repeat0.00001794Direct
Sm-like ribonucleoproteins0.00002564Direct
SNARE-like0.0001001Direct
P-loop containing nucleoside triphosphate hydrolases0.0001282Direct
WD40 repeat-like0.0003386Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleosome core histones0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Proteasome subunits0.00000001431Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0000001231Direct
Group II chaperonin (CCT, TRIC), apical domain0.000000355Direct
RecA protein-like (ATPase-domain)0.0000007662Direct
Ferredoxin reductase FAD-binding domain-like0.000003685Direct
F1F0 ATP synthase subunit C0.00001736Direct
Clathrin coat assembly domain0.0001098Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0001205Direct
G proteins0.0005666Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Histone-fold0Direct
GroEL equatorial domain-like0.0000001295Direct
GroEL-intermediate domain like0.0000001295Direct
GroEL apical domain-like0.0000003126Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000002443Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.000002881Direct
Riboflavin synthase domain-like0.000002881Direct
F1F0 ATP synthase subunit C0.000009167Direct
ARM repeat0.00001463Direct
Sm-like ribonucleoproteins0.00002093Direct
SNARE-like0.00008197Direct
P-loop containing nucleoside triphosphate hydrolases0.0001051Direct
WD40 repeat-like0.000279Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000001295Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000001295Direct
    63380,52343
  • 63380 - Riboflavin synthase domain-like
  • 52343 - Ferredoxin reductase-like, C-terminal NADP-linked domain
  • 0.0000003349Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000001938Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000001295Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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