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Worm Phenotype (WP): vesicle organization variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + 2:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
+ 1:   cell component morphology variant [WBPhenotype:0002089] <19>(81|85) (81|43|9)
0:   vesicle organization variant [WBPhenotype:0001671] <2>(14|12) (15|5|1)
- 1:   vesicle morphology variant [WBPhenotype:0001323] <3>(14|12) (15|5|1)
- 1:   vesicle number variant [WBPhenotype:0001332] <1>(0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Histone-fold0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
F1F0 ATP synthase subunit C0.000009511Direct
Riboflavin synthase domain-like0.000488Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.000488Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.001373Inherited
GroEL equatorial domain-like0.003901Inherited
GroEL-intermediate domain like0.003901Inherited
GroEL apical domain-like0.003901Inherited
Sm-like ribonucleoproteins0.0227Inherited
SNARE-like0.06039Inherited
ARM repeat0.416Inherited
Protein kinase-like (PK-like)1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Nucleosome core histones0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ferredoxin reductase FAD-binding domain-like0.000003193Direct
F1F0 ATP synthase subunit C0.00001507Direct
Proteasome subunits0.0002265Direct
RecA protein-like (ATPase-domain)0.0003995Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.001364Inherited
Group II chaperonin (CCT, TRIC), apical domain0.001364Inherited
Clathrin coat assembly domain0.02043Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.02182Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Histone-fold0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
F1F0 ATP synthase subunit C0.000007785Direct
Riboflavin synthase domain-like0.0004057Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.0004057Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.001153Inherited
GroEL-intermediate domain like0.003313Inherited
GroEL equatorial domain-like0.003313Inherited
GroEL apical domain-like0.003313Inherited
Sm-like ribonucleoproteins0.01981Inherited
SNARE-like0.05378Inherited
WD40 repeat-like0.3024Inherited
ARM repeat0.3947Inherited
Protein kinase-like (PK-like)1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    63380,52343
  • 63380 - Riboflavin synthase domain-like
  • 52343 - Ferredoxin reductase-like, C-terminal NADP-linked domain
  • 0.0000002718Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000001642Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.003313Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.003313Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.003313Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)