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Worm Phenotype (WP): cytoplasmic processing body variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <4>
+ + + + 4:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + + 3:   cell type morphology variant [WBPhenotype:0002108] <12>(79|80) (81|44|15)
+ + + 3:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
+ + 2:   cell component morphology variant [WBPhenotype:0002089] <19>(81|85) (81|43|9)
+ + 2:   germ cell morphology variant [WBPhenotype:0000900] <4>(45|41) (46|22|8)
+ 1:   germ cell cytoplasmic morphology variant [WBPhenotype:0001300] <2>(12|8) (12|5|2)
0:   cytoplasmic processing body variant [WBPhenotype:0001794](7|5) (7|4|2)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Cdc48 domain 2-like0.0000005345Direct
ADC-like0.0000005345Direct
Class II aaRS and biotin synthetases0.000006001Direct
Zn-binding ribosomal proteins0.00001655Direct
Class II aaRS ABD-related0.00003204Direct
Nucleic acid-binding proteins0.0000728Direct
dsRNA-binding domain-like0.0006533Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Cdc48 N-terminal domain-like0.0000007282Direct
Cdc48 domain 2-like0.0000007282Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.00000545Direct
Cold shock DNA-binding domain-like0.00002601Direct
Actin/HSP700.0004258Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
ADC-like0.0000004336Direct
Cdc48 domain 2-like0.0000004336Direct
Class II aaRS and biotin synthetases0.000004906Direct
Zn-binding ribosomal proteins0.00001358Direct
Class II aaRS ABD-related0.00002633Direct
Nucleic acid-binding proteins0.00005999Direct
dsRNA-binding domain-like0.000545Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.00002861Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.0008997Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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