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Worm Phenotype (WP): pathogen induced antimicrobial gene expression variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + + 5:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|56)
+ + + + 4:   organism environmental stimulus response variant [WBPhenotype:0000738] <15>(138|128) (139|57|18)
+ + + + 4:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|55)
+ + + 3:   organism stress response variant [WBPhenotype:0000067] <20>(75|63) (76|26|7)
+ + + 3:   organism metabolism processing variant [WBPhenotype:0000027] <25>(178|190) (182|87|26)
+ + 2:   organism pathogen response variant [WBPhenotype:0001012] <10>(22|20) (23|10|3)
+ + 2:   gene expression variant [WBPhenotype:0000717] <11>(127|139) (131|64|20)
+ 1:   antimicrobial gene expression variant [WBPhenotype:0002534] <2>(8|9) (9|3|1)
+ 1:   innate immune response variant [WBPhenotype:0002164] <2>(8|9) (9|3|1)
+ 1:   pathogen induced gene expression variant [WBPhenotype:0001857] <1>(8|9) (9|3|1)
0:   pathogen induced antimicrobial gene expression variant [WBPhenotype:0001800] <2>(8|9) (9|3|1)
- 1:   hyperinduction of antimicrobial peptide expression after infection [WBPhenotype:0002459](0|0) (0|0|0)
- 1:   no induction of antimicrobial peptide expression after infection [WBPhenotype:0002460](5|6) (6|2|1)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Histone-fold0Direct
Cysteine-rich domain0.000003002Direct
RNA-binding domain, RBD0.00007591Direct
GroEL-intermediate domain like0.0001173Direct
GroEL equatorial domain-like0.0001173Direct
GroEL apical domain-like0.0001885Direct
WD40 repeat-like0.000206Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.0005296Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleosome core histones0Direct
Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)0.000000347Direct
PLC-like (P variant)0.00002226Direct
Canonical RBD0.00006144Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0001151Direct
Group II chaperonin (CCT, TRIC), apical domain0.0001988Direct
WD40-repeat0.0002119Direct
Armadillo repeat0.0006939Direct
Proteasome subunits0.001303Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Histone-fold0Direct
Cysteine-rich domain0.000002436Direct
RNA-binding domain, RBD0.00006212Direct
GroEL equatorial domain-like0.00009616Direct
GroEL-intermediate domain like0.00009616Direct
GroEL apical domain-like0.0001548Direct
WD40 repeat-like0.0001693Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.0004383Direct
Tubulin C-terminal domain-like0.0014Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57889,57889
  • 57889 - Cysteine-rich domain
  • 57889 - Cysteine-rich domain
  • 0.000002555Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00009616Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00009616Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00009616Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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