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Worm Phenotype (WP): antimicrobial gene expression variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <4>
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + + + 5:   organism physiology variant [WBPhenotype:0000576] <10>(355|415) (355|191|56)
+ + + + 4:   organism homeostasis metabolism variant [WBPhenotype:0000577] <17>(346|406) (348|189|55)
+ + + 3:   organism environmental stimulus response variant [WBPhenotype:0000738] <16>(115|103) (118|51|16)
+ + 2:   organism pathogen response variant [WBPhenotype:0001012] <9>(24|24) (25|10|3)
+ 1:   innate immune response variant [WBPhenotype:0002164] <2>(10|11) (11|3|1)
0:   antimicrobial gene expression variant [WBPhenotype:0001800] <2>(10|11) (11|3|1)
- 1:   hyperinduction of antimicrobial peptide expression after infection [WBPhenotype:0002459](0|0) (0|0|0)
- 1:   no induction of antimicrobial peptide expression after infection [WBPhenotype:0002460](6|6) (6|2|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Histone-fold0Direct
Cysteine-rich domain0.000003283Direct
RNA-binding domain, RBD0.00009299Direct
GroEL equatorial domain-like0.0001229Direct
GroEL-intermediate domain like0.0001229Direct
GroEL apical domain-like0.0001974Direct
WD40 repeat-like0.000233Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0002987Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.0005716Direct
Tubulin C-terminal domain-like0.001744Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleosome core histones0Direct
Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)0.0000003916Direct
PLC-like (P variant)0.00002408Direct
Canonical RBD0.0000791Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0001225Direct
Group II chaperonin (CCT, TRIC), apical domain0.0002116Direct
WD40-repeat0.0002449Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0003385Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.0003464Direct
Armadillo repeat0.0007381Direct
Proteasome subunits0.001386Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Histone-fold0Direct
Cysteine-rich domain0.000002684Direct
RNA-binding domain, RBD0.00007674Direct
GroEL-intermediate domain like0.0001015Direct
GroEL equatorial domain-like0.0001015Direct
GroEL apical domain-like0.0001633Direct
WD40 repeat-like0.0001928Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0002477Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.0004761Direct
Nucleotidylyl transferase0.0008509Direct
Tubulin C-terminal domain-like0.001468Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57889,57889
  • 57889 - Cysteine-rich domain
  • 57889 - Cysteine-rich domain
  • 0.000002724Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0001015Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0001015Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0001015Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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