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Worm Phenotype (WP): meiotic progression prophase variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <4>
+ + + + + 5:   organism development variant [WBPhenotype:0000531] <10>(504|576) (504|246|68)
+ + + + + 5:   development variant [WBPhenotype:0000518] <7>(506|577) (506|246|68)
+ + + + 4:   cell development variant [WBPhenotype:0000529] <17>(128|124) (129|49|15)
+ + + + 4:   embryonic development variant [WBPhenotype:0000749] <21>(445|531) (445|231|63)
+ + + + 4:   lethal [WBPhenotype:0000062] <5>(498|574) (498|245|68)
+ + + + 4:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + 3:   germ cell differentiation variant [WBPhenotype:0000894] <3>(36|39) (36|15|2)
+ + + 3:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|66|17)
+ + + 3:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|66|17)
+ + + 3:   embryonic lethal [WBPhenotype:0000050] <7>(443|531) (443|230|63)
+ + + 3:   gametogenesis variant [WBPhenotype:0000774] <2>(65|59) (66|27|6)
+ + 2:   germ cell development variant [WBPhenotype:0000812] <8>(63|59) (64|27|6)
+ + 2:   cell division variant [WBPhenotype:0000746] <20>(55|57) (55|24|4)
+ + 2:   oogenesis variant [WBPhenotype:0000186] <5>(32|33) (32|14|2)
+ + 2:   early embryonic lethal [WBPhenotype:0001100] <30>(61|63) (61|26|4)
+ 1:   meiotic progression during oogenesis variant [WBPhenotype:0000313] <2>(26|28) (26|12|2)
+ 1:   meiosis variant [WBPhenotype:0000775] <11>(38|34) (38|16|4)
+ 1:   meiosis defective early emb [WBPhenotype:0001041] <11>(38|34) (38|16|4)
0:   meiotic progression prophase variant [WBPhenotype:0001824] <4>(24|23) (24|11|2)
- 1:   diplotene progression during oogenesis variant [WBPhenotype:0001947] <2>(11|13) (11|5|1)
- 1:   pachytene progression during oogenesis variant [WBPhenotype:0001946] <2>(19|16) (19|7|2)
- 1:   diakinesis progression during oogenesis variant [WBPhenotype:0001948] <1>(2|4) (2|2|0)
- 1:   homolog association variant [WBPhenotype:0001963](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Skp1 dimerisation domain-like0Direct
GroEL equatorial domain-like0.00000000002971Direct
GroEL-intermediate domain like0.00000000002971Direct
GroEL apical domain-like0.0000000001435Direct
Translation proteins SH3-like domain0.00000007149Direct
Ribosomal proteins S24e, L23 and L15e0.00001521Direct
F1F0 ATP synthase subunit C0.00001521Direct
S15/NS1 RNA-binding domain0.00001521Direct
Translation proteins0.00002704Direct
Translational machinery components0.0000432Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0003132Direct
Sm-like ribonucleoproteins0.003419Inherited
Class II aaRS and biotin synthetases0.03182Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.03367Inherited
L30e-like0.03367Inherited
POZ domain0.04015Inherited
SNARE-like0.07103Inherited
Nucleic acid-binding proteins0.08019Inherited
Nucleotidylyl transferase0.1112Inherited
Ribosomal protein S5 domain 2-like0.1364Inherited
Histone-fold0.9878Inherited
Protein kinase-like (PK-like)1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Skp1 dimerisation domain-like0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00000000001368Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000000001182Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0000004661Direct
Anticodon-binding domain0.000005568Direct
Translational machinery components0.00001076Direct
F1F0 ATP synthase subunit C0.00002615Direct
Cold shock DNA-binding domain-like0.00004349Direct
Elongation factors0.00009652Direct
Clathrin adaptor core protein0.0001636Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0005315Direct
Nitrogenase iron protein-like0.001262Inherited
BTB/POZ domain0.01616Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.0337Inherited
RecA protein-like (ATPase-domain)0.03396Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.03396Inherited
L30e/L7ae ribosomal proteins0.07063Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.07063Inherited
Nucleosome core histones0.9734Inherited
Protein kinases, catalytic subunit1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Skp1 dimerisation domain-like0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL-intermediate domain like0.00000000002365Direct
GroEL equatorial domain-like0.00000000002365Direct
GroEL apical domain-like0.0000000001144Direct
Translation proteins SH3-like domain0.00000005767Direct
S15/NS1 RNA-binding domain0.00001247Direct
F1F0 ATP synthase subunit C0.00001247Direct
Ribosomal proteins S24e, L23 and L15e0.00001247Direct
Translation proteins0.00002221Direct
Translational machinery components0.00003555Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0002598Direct
Sm-like ribonucleoproteins0.0029Inherited
Class II aaRS and biotin synthetases0.02796Inherited
L30e-like0.02962Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.02962Inherited
POZ domain0.03549Inherited
SNARE-like0.06353Inherited
Nucleic acid-binding proteins0.07198Inherited
Nucleotidylyl transferase0.1007Inherited
Ribosomal protein S5 domain 2-like0.1244Inherited
Histone-fold0.9768Inherited
Protein kinase-like (PK-like)1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000000002365Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00000000002365Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000002642Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.00001247Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.00002243Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0002598Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.06353Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.06353Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.06353Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000000002365Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0002598Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)