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Worm Phenotype (WP): pathogen induced gene expression variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + 4:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|56)
+ + + 3:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|55)
+ + + 3:   organism environmental stimulus response variant [WBPhenotype:0000738] <15>(138|128) (139|57|18)
+ + 2:   organism metabolism processing variant [WBPhenotype:0000027] <25>(178|190) (182|87|26)
+ + 2:   organism stress response variant [WBPhenotype:0000067] <20>(75|63) (76|26|7)
+ 1:   organism pathogen response variant [WBPhenotype:0001012] <10>(22|20) (23|10|3)
+ 1:   gene expression variant [WBPhenotype:0000717] <11>(127|139) (131|64|20)
0:   pathogen induced gene expression variant [WBPhenotype:0001857] <1>(8|9) (9|3|1)
- 1:   pathogen induced antimicrobial gene expression variant [WBPhenotype:0001800] <2>(8|9) (9|3|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Histone-fold0.000000000002258Direct
Cysteine-rich domain0.0006916Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.002879Inherited
GroEL-intermediate domain like0.008483Inherited
GroEL equatorial domain-like0.008483Inherited
GroEL apical domain-like0.01279Inherited
RNA-binding domain, RBD0.01457Inherited
WD40 repeat-like0.01541Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleosome core histones0.0000000000001224Direct
Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)0.00003978Direct
PLC-like (P variant)0.0008375Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.005181Inherited
WD40-repeat0.005409Inherited
Canonical RBD0.005409Inherited
Group II chaperonin (CCT, TRIC), apical domain0.008457Inherited
Armadillo repeat0.01285Inherited
Proteasome subunits0.04312Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Histone-fold0.00000000000178Direct
Cysteine-rich domain0.0005737Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.002429Inherited
GroEL equatorial domain-like0.007269Inherited
GroEL-intermediate domain like0.007269Inherited
GroEL apical domain-like0.01104Inherited
RNA-binding domain, RBD0.01262Inherited
WD40 repeat-like0.01335Inherited
Tubulin C-terminal domain-like0.0692Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57889,57889
  • 57889 - Cysteine-rich domain
  • 57889 - Cysteine-rich domain
  • 0.0001383Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.007269Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.007269Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.007269Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)