SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): body wall muscle sarcomere morphology variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
+ + + + + 5:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + + + 4:   cell type morphology variant [WBPhenotype:0002108] <12>(77|76) (79|45|15)
+ + + + 4:   organ system morphology variant [WBPhenotype:0000534] <9>(99|104) (101|47|17)
+ + + 3:   muscle system morphology variant [WBPhenotype:0000603] <2>(21|23) (21|16|5)
+ + + 3:   muscle cell morphology variant [WBPhenotype:0000904] <4>(23|27) (23|16|6)
+ + 2:   striated muscle morphology variant [WBPhenotype:0000924] <2>(20|23) (20|16|5)
+ 1:   body wall muscle morphology variant [WBPhenotype:0000926] <3>(19|21) (19|15|4)
0:   body wall muscle sarcomere morphology variant [WBPhenotype:0001889] <4>(19|21) (19|15|4)
- 1:   M line variant [WBPhenotype:0001891] <1>(0|0) (0|0|0)
- 1:   body wall muscle thick filament variant [WBPhenotype:0000782] <1>(5|3) (5|2|1)
- 1:   body wall muscle thin filament variant [WBPhenotype:0000781] <1>(0|0) (0|0|0)
- 1:   body wall muscle dense body variant [WBPhenotype:0001890](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Integrin domains0Direct
SH3-domain0.000000000009738Direct
SH2 domain0.00000002692Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.0000000692Direct
Calpain large subunit, middle domain (domain III)0.0000002174Direct
Myosin rod fragments0.00002306Direct
Immunoglobulin0.00003386Direct
Fibronectin type III0.00006361Direct
Second domain of FERM0.00006371Direct
Tropomyosin0.00007681Direct
DBL homology domain (DH-domain)0.00009155Direct
Growth factor receptor domain0.00009313Direct
Voltage-gated potassium channels0.0002749Direct
Troponin coil-coiled subunits0.0003242Direct
Cysteine-rich domain0.0004526Direct
EGF/Laminin0.0006176Direct
Actin-like ATPase domain0.005124Inherited
Glutathione synthetase ATP-binding domain-like0.01719Inherited
Calponin-homology domain, CH-domain0.6889Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Integrin domains0Direct
SH3-domain0.0000000001221Direct
Pleckstrin-homology domain (PH domain)0.0000000003342Direct
LIM domain0.00000007983Direct
SH2 domain0.0000001909Direct
Calpain large subunit, middle domain (domain III)0.0000004409Direct
I set domains0.00000153Direct
Calpain large subunit, catalytic domain (domain II)0.00003482Direct
Myosin rod fragments0.00003936Direct
Third domain of FERM0.00007458Direct
Second domain of FERM0.00008416Direct
Laminin-type module0.0001137Direct
First domain of FERM0.0001137Direct
PLC-like (P variant)0.0001298Direct
Tropomyosin0.0001298Direct
DBL homology domain (DH-domain)0.000177Direct
Fibronectin type III0.0001784Direct
Lamin A/C globular tail domain0.0008018Direct
Synaptotagmin-like (S variant)0.0009515Direct
Actin/HSP700.0009634Direct
Calponin-homology domain, CH-domain0.6293Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Integrin domains0Direct
SH3-domain0.000000000007685Direct
SH2 domain0.00000002151Direct
C2 domain (Calcium/lipid-binding domain, CaLB)0.00000005539Direct
Calpain large subunit, middle domain (domain III)0.0000001747Direct
Myosin rod fragments0.0000188Direct
Immunoglobulin0.00002764Direct
Fibronectin type III0.00005205Direct
Second domain of FERM0.00005213Direct
Tropomyosin0.00006285Direct
DBL homology domain (DH-domain)0.000075Direct
Growth factor receptor domain0.0000763Direct
Voltage-gated potassium channels0.0002264Direct
Troponin coil-coiled subunits0.0002671Direct
Cysteine-rich domain0.0003741Direct
EGF/Laminin0.0005117Direct
Actin-like ATPase domain0.004353Inherited
Glutathione synthetase ATP-binding domain-like0.01493Inherited
Calponin-homology domain, CH-domain0.6678Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0000000008143Direct
    54001,49758
  • 54001 - Cysteine proteinases
  • 49758 - Calpain large subunit, middle domain (domain III)
  • 0.00000004578Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.000002051Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.000004803Direct
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.00000857Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00001738Direct
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.00005213Direct
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.0001409Direct
    64593,74853
  • 64593 - Intermediate filament protein, coiled coil region
  • 74853 - Lamin A/C globular tail domain
  • 0.0001409Direct
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.0001409Direct
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.0001409Direct
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.0001598Direct
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.0001598Direct
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.0002671Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.002066Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00000000007986Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.00000513Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.00003587Direct
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.0001028Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)