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Worm Phenotype (WP): rachis morphology variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <4>
+ + + + 4:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + + 3:   organ system morphology variant [WBPhenotype:0000534] <9>(98|101) (99|48|16)
+ + 2:   reproductive system morphology variant [WBPhenotype:0000605] <5>(49|49) (51|18|6)
+ 1:   gonad morphology variant [WBPhenotype:0001355] <10>(29|29) (29|9|2)
0:   rachis morphology variant [WBPhenotype:0001940] <4>(15|14) (15|6|2)
- 1:   germ nuclei rachis [WBPhenotype:0001691](1|1) (1|0|0)
- 1:   rachis absent [WBPhenotype:0001942](1|0) (1|0|0)
- 1:   rachis narrow [WBPhenotype:0001941](10|8) (10|3|2)
- 1:   rachis wide [WBPhenotype:0001943](1|0) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0000000001006Direct
Translation proteins SH3-like domain0.00000009664Direct
Translation proteins0.000002843Direct
L30e-like0.00001372Direct
Ribosomal proteins S24e, L23 and L15e0.00001805Direct
S15/NS1 RNA-binding domain0.00001805Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00004598Direct
Translational machinery components0.00005123Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0003697Direct
GroEL equatorial domain-like0.2254Inherited
GroEL-intermediate domain like0.2254Inherited
GroEL apical domain-like0.2254Inherited
Cysteine-rich domain0.3643Inherited
Protein kinase-like (PK-like)0.9084Inherited
"Winged helix" DNA-binding domain1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Proteasome subunits0.000000000000003451Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0000005412Direct
Anticodon-binding domain0.000006082Direct
Translational machinery components0.00001199Direct
L30e/L7ae ribosomal proteins0.00002851Direct
Elongation factors0.0001089Direct
Clathrin adaptor core protein0.0001781Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0005773Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0009147Direct
Cold shock DNA-binding domain-like0.025Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.09401Inherited
Group II chaperonin (CCT, TRIC), apical domain0.09401Inherited
Group II chaperonin (CCT, TRIC), intermediate domain0.1356Inherited
Protein kinases, catalytic subunit0.9251Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0000000000802Direct
Translation proteins SH3-like domain0.000000078Direct
Translation proteins0.000002322Direct
L30e-like0.00001124Direct
S15/NS1 RNA-binding domain0.00001481Direct
Ribosomal proteins S24e, L23 and L15e0.00001481Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00003787Direct
Translational machinery components0.00004221Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0003067Direct
GroEL-intermediate domain like0.2086Inherited
GroEL equatorial domain-like0.2086Inherited
GroEL apical domain-like0.2086Inherited
Cysteine-rich domain0.3439Inherited
Protein kinase-like (PK-like)0.8934Inherited
"Winged helix" DNA-binding domain1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.00001481Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.00002872Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.00009379Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0003067Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.2086Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.2086Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0003067Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.2086Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)