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Worm Phenotype (WP): rachis morphology variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + + 3:   organ system morphology variant [WBPhenotype:0000534] <9>(99|104) (101|47|17)
+ + 2:   reproductive system morphology variant [WBPhenotype:0000605] <5>(49|49) (50|17|6)
+ 1:   gonad morphology variant [WBPhenotype:0001355] <10>(29|29) (29|9|2)
0:   rachis morphology variant [WBPhenotype:0001940] <4>(15|14) (15|6|2)
- 1:   germ nuclei rachis [WBPhenotype:0001691](1|1) (1|0|0)
- 1:   rachis absent [WBPhenotype:0001942](1|0) (1|0|0)
- 1:   rachis narrow [WBPhenotype:0001941](10|8) (10|3|2)
- 1:   rachis wide [WBPhenotype:0001943](1|0) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0000000001008Direct
Translation proteins SH3-like domain0.00000009699Direct
Translation proteins0.000002849Direct
L30e-like0.00001373Direct
Ribosomal proteins S24e, L23 and L15e0.00001808Direct
S15/NS1 RNA-binding domain0.00001808Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00004605Direct
Translational machinery components0.00005133Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0003701Direct
GroEL-intermediate domain like0.2246Inherited
GroEL equatorial domain-like0.2246Inherited
GroEL apical domain-like0.2246Inherited
Cysteine-rich domain0.3644Inherited
Protein kinase-like (PK-like)0.9117Inherited
"Winged helix" DNA-binding domain1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Proteasome subunits0.000000000000003129Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0000005356Direct
Anticodon-binding domain0.000006035Direct
Translational machinery components0.00001188Direct
L30e/L7ae ribosomal proteins0.00002829Direct
Elongation factors0.0001081Direct
Clathrin adaptor core protein0.0001767Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0005725Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0009067Direct
Cold shock DNA-binding domain-like0.02464Inherited
Group II chaperonin (CCT, TRIC), apical domain0.09307Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.09307Inherited
Group II chaperonin (CCT, TRIC), intermediate domain0.1342Inherited
Protein kinases, catalytic subunit0.9254Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000000007974Direct
Translation proteins SH3-like domain0.00000007771Direct
Translation proteins0.000002311Direct
L30e-like0.00001118Direct
Ribosomal proteins S24e, L23 and L15e0.00001475Direct
S15/NS1 RNA-binding domain0.00001475Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00003765Direct
Translational machinery components0.000042Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0003051Direct
GroEL equatorial domain-like0.2077Inherited
GroEL apical domain-like0.2077Inherited
GroEL-intermediate domain like0.2077Inherited
Cysteine-rich domain0.344Inherited
Protein kinase-like (PK-like)0.8965Inherited
"Winged helix" DNA-binding domain1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.00001475Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.0000285Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.00009313Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0003051Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.2077Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.2077Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0003051Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.2077Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)