SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): oocytes small

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <4>
+ + + + + 5:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + + + 4:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
+ + + 3:   cell type morphology variant [WBPhenotype:0002108] <12>(79|80) (81|44|15)
+ + 2:   germ cell morphology variant [WBPhenotype:0000900] <4>(45|41) (46|22|8)
+ 1:   oocyte morphology variant [WBPhenotype:0001260] <9>(27|30) (27|13|3)
0:   oocytes small [WBPhenotype:0001945](3|5) (3|3|1)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
GroEL equatorial domain-like0.000000000000003562Direct
GroEL-intermediate domain like0.000000000000003562Direct
GroEL apical domain-like0.00000000000001775Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00000000000000157Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000000000001378Direct
Translational machinery components0.00000004222Direct
Elongation factors0.0009082Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL-intermediate domain like0.000000000000002811Direct
GroEL equatorial domain-like0.000000000000002811Direct
GroEL apical domain-like0.00000000000001403Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000000000002811Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000000000000002811Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.0009236Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000000000002811Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)