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Worm Phenotype (WP): diplotene progression during oogenesis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + + + 9:   Variant [WBPhenotype:0000886] <2>
+ + + + + + 6:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + + 5:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
+ + + + 4:   germ cell differentiation variant [WBPhenotype:0000894] <3>(38|40) (38|15|2)
+ + + + 4:   gametogenesis variant [WBPhenotype:0000774] <2>(57|57) (58|22|4)
+ + + + 4:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ + + 3:   cell division variant [WBPhenotype:0000746] <19>(51|54) (52|20|4)
+ + + 3:   cell cycle variant [WBPhenotype:0000740] <6>(35|35) (35|17|4)
+ + + 3:   oogenesis variant [WBPhenotype:0000186] <5>(33|34) (33|14|2)
+ + + 3:   germ cell development variant [WBPhenotype:0000812] <7>(54|57) (55|22|4)
+ + 2:   meiotic progression during oogenesis variant [WBPhenotype:0000313] <2>(26|28) (26|12|2)
+ + 2:   meiosis variant [WBPhenotype:0000775] <10>(34|32) (34|14|4)
+ 1:   meiotic progression prophase variant [WBPhenotype:0001824] <4>(24|23) (24|11|2)
0:   diplotene progression during oogenesis variant [WBPhenotype:0001947] <2>(11|13) (11|5|1)
- 1:   diplotene absent during oogenesis [WBPhenotype:0001954](2|2) (2|1|1)
- 1:   diplotene region organization variant [WBPhenotype:0001950](2|6) (2|2|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Translation proteins SH3-like domain0.000000008362Direct
L30e-like0.000002447Direct
Translation proteins0.000003584Direct
Ribosomal proteins S24e, L23 and L15e0.000004482Direct
Translational machinery components0.00001285Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0000964Direct
Ribosomal protein S5 domain 2-like0.0005089Direct
SNARE-like0.0006437Direct
Histone-fold0.248Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
RecA protein-like (ATPase-domain)0.0000002755Direct
Anticodon-binding domain0.000001623Direct
Translational machinery components0.000002374Direct
Cold shock DNA-binding domain-like0.000005864Direct
L30e/L7ae ribosomal proteins0.000007712Direct
Elongation factors0.00001711Direct
Clathrin adaptor core protein0.00004946Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0001645Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0002637Direct
Nitrogenase iron protein-like0.000399Direct
Nucleosome core histones0.2282Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Translation proteins SH3-like domain0.000000006665Direct
L30e-like0.000001984Direct
Translation proteins0.00000291Direct
Ribosomal proteins S24e, L23 and L15e0.000003642Direct
Translational machinery components0.00001047Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.00007898Direct
Ribosomal protein S5 domain 2-like0.0004213Direct
SNARE-like0.0005335Direct
Histone-fold0.2303Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.000003642Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.000003798Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.00007898Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.0009156Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.00007898Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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