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Worm Phenotype (WP): diplotene progression during oogenesis variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + + 8:   Variant [WBPhenotype:0000886] <4>
+ + + + + + 6:   organism development variant [WBPhenotype:0000531] <10>(504|576) (504|246|68)
+ + + + + + 6:   development variant [WBPhenotype:0000518] <7>(506|577) (506|246|68)
+ + + + + 5:   lethal [WBPhenotype:0000062] <5>(498|574) (498|245|68)
+ + + + + 5:   cell development variant [WBPhenotype:0000529] <17>(128|124) (129|49|15)
+ + + + + 5:   embryonic development variant [WBPhenotype:0000749] <21>(445|531) (445|231|63)
+ + + + + 5:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + + 4:   germ cell differentiation variant [WBPhenotype:0000894] <3>(36|39) (36|15|2)
+ + + + 4:   embryonic lethal [WBPhenotype:0000050] <7>(443|531) (443|230|63)
+ + + + 4:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|66|17)
+ + + + 4:   gametogenesis variant [WBPhenotype:0000774] <2>(65|59) (66|27|6)
+ + + + 4:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|66|17)
+ + + 3:   oogenesis variant [WBPhenotype:0000186] <5>(32|33) (32|14|2)
+ + + 3:   cell division variant [WBPhenotype:0000746] <20>(55|57) (55|24|4)
+ + + 3:   early embryonic lethal [WBPhenotype:0001100] <30>(61|63) (61|26|4)
+ + + 3:   germ cell development variant [WBPhenotype:0000812] <8>(63|59) (64|27|6)
+ + 2:   meiosis defective early emb [WBPhenotype:0001041] <11>(38|34) (38|16|4)
+ + 2:   meiosis variant [WBPhenotype:0000775] <11>(38|34) (38|16|4)
+ + 2:   meiotic progression during oogenesis variant [WBPhenotype:0000313] <2>(26|28) (26|12|2)
+ 1:   meiotic progression prophase variant [WBPhenotype:0001824] <4>(24|23) (24|11|2)
0:   diplotene progression during oogenesis variant [WBPhenotype:0001947] <2>(11|13) (11|5|1)
- 1:   diplotene absent during oogenesis [WBPhenotype:0001954](2|2) (2|1|1)
- 1:   diplotene region organization variant [WBPhenotype:0001950](2|6) (2|2|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Translation proteins SH3-like domain0.000000008336Direct
L30e-like0.000002441Direct
Translation proteins0.000003574Direct
Ribosomal proteins S24e, L23 and L15e0.000004465Direct
Translational machinery components0.00001285Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.00009626Direct
Ribosomal protein S5 domain 2-like0.0005104Direct
SNARE-like0.0006436Direct
Histone-fold0.2471Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
RecA protein-like (ATPase-domain)0.0000002778Direct
Anticodon-binding domain0.000001634Direct
Translational machinery components0.000002394Direct
Cold shock DNA-binding domain-like0.000005924Direct
L30e/L7ae ribosomal proteins0.000007771Direct
Elongation factors0.00001727Direct
Clathrin adaptor core protein0.00004989Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0001657Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000266Direct
Nitrogenase iron protein-like0.000402Direct
Nucleosome core histones0.2281Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Translation proteins SH3-like domain0.000000006694Direct
L30e-like0.000001993Direct
Translation proteins0.000002922Direct
Ribosomal proteins S24e, L23 and L15e0.000003652Direct
Translational machinery components0.00001052Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.00007941Direct
Ribosomal protein S5 domain 2-like0.0004244Direct
SNARE-like0.0005368Direct
Histone-fold0.2294Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.000003652Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.000003813Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.00007941Direct
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.0009177Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.00007941Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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