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Worm Phenotype (WP): pachytene region organization variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + + + + + 6:   cell development variant [WBPhenotype:0000529] <17>(119|124) (119|47|12)
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + + 5:   gametogenesis variant [WBPhenotype:0000774] <2>(57|57) (58|22|4)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ + + + + 5:   germ cell differentiation variant [WBPhenotype:0000894] <3>(38|40) (38|15|2)
+ + + + 4:   germ cell development variant [WBPhenotype:0000812] <7>(54|57) (55|22|4)
+ + + + 4:   cell cycle variant [WBPhenotype:0000740] <6>(35|35) (35|17|4)
+ + + + 4:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + + + 4:   oogenesis variant [WBPhenotype:0000186] <5>(33|34) (33|14|2)
+ + + + 4:   cell division variant [WBPhenotype:0000746] <19>(51|54) (52|20|4)
+ + + 3:   meiosis variant [WBPhenotype:0000775] <10>(34|32) (34|14|4)
+ + + 3:   organ system morphology variant [WBPhenotype:0000534] <9>(99|104) (101|47|17)
+ + + 3:   meiotic progression during oogenesis variant [WBPhenotype:0000313] <2>(26|28) (26|12|2)
+ + 2:   meiotic progression prophase variant [WBPhenotype:0001824] <4>(24|23) (24|11|2)
+ + 2:   reproductive system morphology variant [WBPhenotype:0000605] <5>(49|49) (50|17|6)
+ 1:   pachytene progression during oogenesis variant [WBPhenotype:0001946] <2>(19|16) (19|7|2)
+ 1:   gonad morphology variant [WBPhenotype:0001355] <10>(29|29) (29|9|2)
0:   pachytene region organization variant [WBPhenotype:0001951](9|11) (9|4|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Translation proteins SH3-like domain0.000000003232Direct
L30e-like0.000001253Direct
Ribosomal proteins S24e, L23 and L15e0.00000261Direct
S15/NS1 RNA-binding domain0.00000261Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00000433Direct
Translational machinery components0.00000752Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.00005703Direct
Sm-like ribonucleoproteins0.0002908Direct
Translation proteins0.0008772Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00000002286Direct
Anticodon-binding domain0.0000009653Direct
Translational machinery components0.000001251Direct
L30e/L7ae ribosomal proteins0.000004604Direct
Elongation factors0.000008163Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.00009996Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0001608Direct
Group II chaperonin (CCT, TRIC), apical domain0.000282Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.000282Direct
Cold shock DNA-binding domain-like0.0008333Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Translation proteins SH3-like domain0.000000002573Direct
L30e-like0.000001013Direct
Ribosomal proteins S24e, L23 and L15e0.000002116Direct
S15/NS1 RNA-binding domain0.000002116Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000003518Direct
Translational machinery components0.000006118Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.00004666Direct
Sm-like ribonucleoproteins0.0002394Direct
Translation proteins0.0007299Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.000001724Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.000002116Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.00001378Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.00004666Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.00004666Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)