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Worm Phenotype (WP): pachytene region organization variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   development variant [WBPhenotype:0000518] <7>(506|577) (506|246|68)
+ + + + + + + 7:   organism development variant [WBPhenotype:0000531] <10>(504|576) (504|246|68)
+ + + + + + 6:   lethal [WBPhenotype:0000062] <5>(498|574) (498|245|68)
+ + + + + + 6:   embryonic development variant [WBPhenotype:0000749] <21>(445|531) (445|231|63)
+ + + + + + 6:   cell development variant [WBPhenotype:0000529] <17>(128|124) (129|49|15)
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + + + 5:   embryonic lethal [WBPhenotype:0000050] <7>(443|531) (443|230|63)
+ + + + + 5:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|66|17)
+ + + + + 5:   gametogenesis variant [WBPhenotype:0000774] <2>(65|59) (66|27|6)
+ + + + + 5:   germ cell differentiation variant [WBPhenotype:0000894] <3>(36|39) (36|15|2)
+ + + + + 5:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|66|17)
+ + + + + 5:   Variant [WBPhenotype:0000886] <4>
+ + + + 4:   early embryonic lethal [WBPhenotype:0001100] <30>(61|63) (61|26|4)
+ + + + 4:   cell division variant [WBPhenotype:0000746] <20>(55|57) (55|24|4)
+ + + + 4:   germ cell development variant [WBPhenotype:0000812] <8>(63|59) (64|27|6)
+ + + + 4:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + + + 4:   oogenesis variant [WBPhenotype:0000186] <5>(32|33) (32|14|2)
+ + + 3:   meiosis variant [WBPhenotype:0000775] <11>(38|34) (38|16|4)
+ + + 3:   meiotic progression during oogenesis variant [WBPhenotype:0000313] <2>(26|28) (26|12|2)
+ + + 3:   organ system morphology variant [WBPhenotype:0000534] <9>(98|101) (99|48|16)
+ + + 3:   meiosis defective early emb [WBPhenotype:0001041] <11>(38|34) (38|16|4)
+ + 2:   meiotic progression prophase variant [WBPhenotype:0001824] <4>(24|23) (24|11|2)
+ + 2:   reproductive system morphology variant [WBPhenotype:0000605] <5>(49|49) (51|18|6)
+ 1:   gonad morphology variant [WBPhenotype:0001355] <10>(29|29) (29|9|2)
+ 1:   pachytene progression during oogenesis variant [WBPhenotype:0001946] <2>(19|16) (19|7|2)
0:   pachytene region organization variant [WBPhenotype:0001951](9|11) (9|4|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Translation proteins SH3-like domain0.000000003223Direct
L30e-like0.000001248Direct
Ribosomal proteins S24e, L23 and L15e0.000002602Direct
S15/NS1 RNA-binding domain0.000002602Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000004315Direct
Translational machinery components0.000007513Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.00005686Direct
Sm-like ribonucleoproteins0.000294Direct
Translation proteins0.0008827Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00000002305Direct
Anticodon-binding domain0.0000009719Direct
Translational machinery components0.00000126Direct
L30e/L7ae ribosomal proteins0.000004633Direct
Elongation factors0.000008241Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0001006Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0001621Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0002879Direct
Group II chaperonin (CCT, TRIC), apical domain0.0002879Direct
Cold shock DNA-binding domain-like0.0008484Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Translation proteins SH3-like domain0.000000002584Direct
L30e-like0.000001017Direct
S15/NS1 RNA-binding domain0.000002125Direct
Ribosomal proteins S24e, L23 and L15e0.000002125Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000003529Direct
Translational machinery components0.000006145Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.00004687Direct
Sm-like ribonucleoproteins0.0002437Direct
Translation proteins0.0007389Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.000001732Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.000002125Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.00001385Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.00004687Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.00004687Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)