SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): germline nuclear positioning variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + + 6:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + + + + 5:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
+ + + + 4:   cell component morphology variant [WBPhenotype:0002089] <17>(84|85) (84|42|9)
+ + + 3:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + 3:   cell organization biogenesis variant [WBPhenotype:0010002] <5>(40|43) (41|18|4)
+ + 2:   organelle organization biogenesis variant [WBPhenotype:0001344] <10>(30|29) (31|10|1)
+ + 2:   cell physiology variant [WBPhenotype:0000536] <36>(149|149) (150|64|19)
+ 1:   nuclear positioning variant [WBPhenotype:0000511] <5>(12|14) (13|5|1)
0:   germline nuclear positioning variant [WBPhenotype:0001952] <1>(11|10) (12|5|1)
- 1:   nuclear fallout [WBPhenotype:0001953](0|1) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
GroEL-intermediate domain like0.0000000001522Direct
GroEL equatorial domain-like0.0000000001522Direct
GroEL apical domain-like0.0000000004958Direct
beta-sandwich domain of Sec23/240.0000005359Direct
SNARE-like0.0000005412Direct
Class II aaRS and biotin synthetases0.0001115Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0001374Direct
Actin-like ATPase domain0.0002414Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
beta-sandwich domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Trunk domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00000000007684Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000000003367Direct
Group II chaperonin (CCT, TRIC), intermediate domain0.0000007415Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.0001032Direct
Actin/HSP700.0004342Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal, gelsolin-like domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
GroEL equatorial domain-like0.0000000001205Direct
GroEL-intermediate domain like0.0000000001205Direct
GroEL apical domain-like0.0000000003932Direct
beta-sandwich domain of Sec23/240.000000432Direct
SNARE-like0.0000004363Direct
Class II aaRS and biotin synthetases0.0000914Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0001127Direct
Actin-like ATPase domain0.0001985Direct
Sm-like ribonucleoproteins0.0008662Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000000001205Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000000001205Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.00008662Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000000001205Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)