SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): germline nuclear positioning variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <4>
+ + + + + + 6:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + + + + 5:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
+ + + + 4:   cell component morphology variant [WBPhenotype:0002089] <19>(81|85) (81|43|9)
+ + + 3:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + 3:   cell organization biogenesis variant [WBPhenotype:0010002] <6>(39|44) (40|19|4)
+ + 2:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|66|17)
+ + 2:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|66|17)
+ + 2:   organelle organization biogenesis variant [WBPhenotype:0001344] <13>(22|26) (23|7|1)
+ 1:   nuclear positioning variant [WBPhenotype:0000511] <4>(12|14) (13|5|1)
0:   germline nuclear positioning variant [WBPhenotype:0001952] <1>(11|10) (12|5|1)
- 1:   nuclear fallout [WBPhenotype:0001953](0|1) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
GroEL equatorial domain-like0.0000000001573Direct
GroEL-intermediate domain like0.0000000001573Direct
GroEL apical domain-like0.0000000005123Direct
beta-sandwich domain of Sec23/240.0000005454Direct
SNARE-like0.0000005565Direct
Class II aaRS and biotin synthetases0.0001142Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0001401Direct
Actin-like ATPase domain0.0002481Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
beta-sandwich domain of Sec23/240Direct
Trunk domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00000000008092Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000000003544Direct
Group II chaperonin (CCT, TRIC), intermediate domain0.0000007653Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.000107Direct
Actin/HSP700.0004505Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Helical domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
GroEL-intermediate domain like0.0000000001254Direct
GroEL equatorial domain-like0.0000000001254Direct
GroEL apical domain-like0.0000000004091Direct
beta-sandwich domain of Sec23/240.0000004424Direct
SNARE-like0.0000004515Direct
Class II aaRS and biotin synthetases0.0000943Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0001157Direct
Actin-like ATPase domain0.0002054Direct
Sm-like ribonucleoproteins0.0008869Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000000001254Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000000001254Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.00008974Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000000001254Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)