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Worm Phenotype (WP): germ cell compartment morphology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + + 3:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
+ + 2:   cell type morphology variant [WBPhenotype:0002108] <12>(77|76) (79|45|15)
+ 1:   germ cell morphology variant [WBPhenotype:0000900] <4>(44|41) (45|23|8)
0:   germ cell compartment morphology variant [WBPhenotype:0001969] <4>(25|26) (25|10|2)
- 1:   germ cell compartment nuclei number variant [WBPhenotype:0001970] <2>(6|9) (6|3|1)
- 1:   germ cell compartment size variant [WBPhenotype:0001973] <2>(4|6) (4|2|0)
- 1:   germ cell compartment expansion variant [WBPhenotype:0001980] <1>(20|20) (20|9|2)
- 1:   germ cell partition morphology variant [WBPhenotype:0001977] <1>(1|0) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000000000002089Direct
GroEL-intermediate domain like0.0000000001986Direct
GroEL equatorial domain-like0.0000000001986Direct
GroEL apical domain-like0.0000000009508Direct
beta-sandwich domain of Sec23/240.000008261Direct
L30e-like0.00003455Direct
F1F0 ATP synthase subunit C0.00003834Direct
S15/NS1 RNA-binding domain0.00003834Direct
Translational machinery components0.0001079Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.0001142Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0007551Direct
Translation proteins0.005701Inherited
Nucleic acid-binding proteins0.007812Inherited
Translation proteins SH3-like domain0.01154Inherited
Class II aaRS and biotin synthetases0.0695Inherited
Ribosomal proteins S24e, L23 and L15e0.0911Inherited
Activating enzymes of the ubiquitin-like proteins0.0911Inherited
Ribosomal protein S5 domain 2-like0.1139Inherited
Sm-like ribonucleoproteins0.3304Inherited
Cysteine-rich domain0.4163Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
beta-sandwich domain of Sec23/240Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Trunk domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Proteasome subunits0.00000000000003742Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0000000000819Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000000006993Direct
RecA protein-like (ATPase-domain)0.000003814Direct
Anticodon-binding domain0.00001336Direct
Translational machinery components0.00003141Direct
L30e/L7ae ribosomal proteins0.00006205Direct
F1F0 ATP synthase subunit C0.00006205Direct
Elongation factors0.0003204Direct
Clathrin adaptor core protein0.0003792Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.001206Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.001895Inherited
Extended AAA-ATPase domain0.04084Inherited
Cold shock DNA-binding domain-like0.04593Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.06826Inherited
Laminin-type module0.08555Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.2067Inherited
Actin/HSP700.8535Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
C-terminal, gelsolin-like domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Helical domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000000000001647Direct
GroEL equatorial domain-like0.0000000001573Direct
GroEL-intermediate domain like0.0000000001573Direct
GroEL apical domain-like0.000000000755Direct
beta-sandwich domain of Sec23/240.000006715Direct
L30e-like0.00002822Direct
F1F0 ATP synthase subunit C0.00003133Direct
S15/NS1 RNA-binding domain0.00003133Direct
Translational machinery components0.00008838Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00009362Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0006274Direct
Translation proteins0.004851Inherited
Nucleic acid-binding proteins0.006681Inherited
Translation proteins SH3-like domain0.00994Inherited
Class II aaRS and biotin synthetases0.06209Inherited
Ribosomal proteins S24e, L23 and L15e0.08201Inherited
Activating enzymes of the ubiquitin-like proteins0.08201Inherited
Ribosomal protein S5 domain 2-like0.1032Inherited
Sm-like ribonucleoproteins0.3108Inherited
Cysteine-rich domain0.3956Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0000000001573Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000000001573Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000006715Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.00003133Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.00008321Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.0001943Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0006274Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0000000001573Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0006274Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)