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Worm Phenotype (WP): germ cell compartment nuclei number variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <4>
+ + + + + 5:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + + + 4:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
+ + + 3:   cell type morphology variant [WBPhenotype:0002108] <12>(79|80) (81|44|15)
+ + 2:   germ cell morphology variant [WBPhenotype:0000900] <4>(45|41) (46|22|8)
+ 1:   germ cell compartment morphology variant [WBPhenotype:0001969] <4>(25|26) (25|10|2)
0:   germ cell compartment nuclei number variant [WBPhenotype:0001970] <2>(6|9) (6|3|1)
- 1:   germ cell compartment anucleate [WBPhenotype:0001971](5|7) (5|3|1)
- 1:   germ cell compartment multinucleate [WBPhenotype:0001972](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
F1F0 ATP synthase subunit C0.0000024Direct
Activating enzymes of the ubiquitin-like proteins0.00003018Direct
GroEL equatorial domain-like0.3255Inherited
GroEL-intermediate domain like0.3255Inherited
GroEL apical domain-like0.3255Inherited
Class II aaRS and biotin synthetases0.6254Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
F1F0 ATP synthase subunit C0.000003398Direct
Clathrin adaptor core protein0.0000221Direct
Actin/HSP700.00003263Direct
Group II chaperonin (CCT, TRIC), intermediate domain0.08247Inherited
RecA protein-like (ATPase-domain)0.08247Inherited
Extended AAA-ATPase domain0.1714Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.2678Inherited
Group II chaperonin (CCT, TRIC), apical domain0.2678Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.5598Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
F1F0 ATP synthase subunit C0.000001959Direct
Activating enzymes of the ubiquitin-like proteins0.0000248Direct
GroEL-intermediate domain like0.3058Inherited
GroEL equatorial domain-like0.3058Inherited
GroEL apical domain-like0.3058Inherited
Class II aaRS and biotin synthetases0.6034Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0000004078Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.3058Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.3058Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.3058Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)