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Worm Phenotype (WP): germ cell compartment expansion variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <4>
+ + + + + 5:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + + + 4:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
+ + + 3:   cell type morphology variant [WBPhenotype:0002108] <12>(79|80) (81|44|15)
+ + 2:   germ cell morphology variant [WBPhenotype:0000900] <4>(45|41) (46|22|8)
+ 1:   germ cell compartment morphology variant [WBPhenotype:0001969] <4>(25|26) (25|10|2)
0:   germ cell compartment expansion variant [WBPhenotype:0001980] <1>(20|20) (20|9|2)
- 1:   germ cell compartment expansion absent [WBPhenotype:0001981](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Helical domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
GroEL equatorial domain-like0.00000000003552Direct
GroEL-intermediate domain like0.00000000003552Direct
GroEL apical domain-like0.0000000001714Direct
Translation proteins SH3-like domain0.00000008331Direct
Sm-like ribonucleoproteins0.0000001257Direct
Class II aaRS and biotin synthetases0.0000003368Direct
Nucleic acid-binding proteins0.000001266Direct
Translation proteins0.000002418Direct
beta-sandwich domain of Sec23/240.000003531Direct
L30e-like0.00001236Direct
Ribosomal proteins S24e, L23 and L15e0.00001658Direct
F1F0 ATP synthase subunit C0.00001658Direct
S15/NS1 RNA-binding domain0.00001658Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00004148Direct
Translational machinery components0.00004706Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0003406Direct
Ribosomal protein S5 domain 2-like0.0004332Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
beta-sandwich domain of Sec23/240Direct
Trunk domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00000000001452Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000000001254Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.000000422Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0000004901Direct
Anticodon-binding domain0.000005735Direct
Translational machinery components0.00001116Direct
L30e/L7ae ribosomal proteins0.00002692Direct
F1F0 ATP synthase subunit C0.00002692Direct
Cold shock DNA-binding domain-like0.00004559Direct
Laminin-type module0.00007615Direct
Elongation factors0.0001005Direct
Clathrin adaptor core protein0.0001682Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0005467Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000867Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Helical domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
GroEL-intermediate domain like0.00000000002828Direct
GroEL equatorial domain-like0.00000000002828Direct
GroEL apical domain-like0.0000000001368Direct
Translation proteins SH3-like domain0.00000006723Direct
Sm-like ribonucleoproteins0.0000001015Direct
Class II aaRS and biotin synthetases0.0000002728Direct
Nucleic acid-binding proteins0.000001032Direct
Translation proteins0.000001974Direct
beta-sandwich domain of Sec23/240.000002886Direct
L30e-like0.00001012Direct
S15/NS1 RNA-binding domain0.0000136Direct
F1F0 ATP synthase subunit C0.0000136Direct
Ribosomal proteins S24e, L23 and L15e0.0000136Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00003413Direct
Translational machinery components0.00003877Direct
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.0002825Direct
Ribosomal protein S5 domain 2-like0.0003598Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000000002828Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00000000002828Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000002886Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.0000136Direct
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.00002542Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.00008619Direct
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0002825Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000000002828Direct
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.0002825Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)