SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): cell membrane organization biogenesis variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <4>
+ + + + 4:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + + 3:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
+ + 2:   cell component morphology variant [WBPhenotype:0002089] <19>(81|85) (81|43|9)
+ 1:   cell organization biogenesis variant [WBPhenotype:0010002] <6>(39|44) (40|19|4)
0:   cell membrane organization biogenesis variant [WBPhenotype:0001982](8|9) (8|4|1)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
F1F0 ATP synthase subunit C0.000005846Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000149Direct
GroEL equatorial domain-like0.0004293Direct
GroEL-intermediate domain like0.0004293Direct
GroEL apical domain-like0.0004293Direct
Translation proteins SH3-like domain0.0004382Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
F1F0 ATP synthase subunit C0.000008412Direct
Clathrin adaptor core protein0.00005395Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0002701Direct
Group II chaperonin (CCT, TRIC), apical domain0.0002701Direct
Proteasome subunits0.0008022Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0008741Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
F1F0 ATP synthase subunit C0.00000478Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0001231Direct
GroEL-intermediate domain like0.0003565Direct
GroEL equatorial domain-like0.0003565Direct
GroEL apical domain-like0.0003565Direct
Translation proteins SH3-like domain0.0003641Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000001003Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0003565Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0003565Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0003565Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)