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Worm Phenotype (WP): meiotic chromosome organization variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <4>
+ + + + + 5:   organism development variant [WBPhenotype:0000531] <10>(504|576) (504|246|68)
+ + + + + 5:   development variant [WBPhenotype:0000518] <7>(506|577) (506|246|68)
+ + + + 4:   physiology variant [WBPhenotype:0000519] <7>(487|558) (487|240|64)
+ + + + 4:   lethal [WBPhenotype:0000062] <5>(498|574) (498|245|68)
+ + + + 4:   embryonic development variant [WBPhenotype:0000749] <21>(445|531) (445|231|63)
+ + + + 4:   cell development variant [WBPhenotype:0000529] <17>(128|124) (129|49|15)
+ + + 3:   embryonic lethal [WBPhenotype:0000050] <7>(443|531) (443|230|63)
+ + + 3:   cell physiology variant [WBPhenotype:0000536] <26>(152|154) (153|66|17)
+ + + 3:   blast cell physiology variant [WBPhenotype:0000985] <26>(152|154) (153|66|17)
+ + + 3:   gametogenesis variant [WBPhenotype:0000774] <2>(65|59) (66|27|6)
+ + 2:   germ cell development variant [WBPhenotype:0000812] <8>(63|59) (64|27|6)
+ + 2:   cell division variant [WBPhenotype:0000746] <20>(55|57) (55|24|4)
+ + 2:   early embryonic lethal [WBPhenotype:0001100] <30>(61|63) (61|26|4)
+ 1:   meiosis variant [WBPhenotype:0000775] <11>(38|34) (38|16|4)
+ 1:   meiosis defective early emb [WBPhenotype:0001041] <11>(38|34) (38|16|4)
0:   meiotic chromosome organization variant [WBPhenotype:0002012] <11>(16|14) (16|4|1)
- 1:   chromosome disjunction defective [WBPhenotype:0001174] <3>(6|4) (6|1|0)
- 1:   crossover variant [WBPhenotype:0002083] <3>(0|0) (0|0|0)
- 1:   chromosome condensation variant [WBPhenotype:0001361] <1>(7|8) (7|3|1)
- 1:   chromosome decondensation variant [WBPhenotype:0002061] <1>(0|0) (0|0|0)
- 1:   crossover defective [WBPhenotype:0001814](0|0) (0|0|0)
- 1:   desynapsis defective [WBPhenotype:0001815](0|0) (0|0|0)
- 1:   meiotic chromatin reorganization variant [WBPhenotype:0001967](0|0) (0|0|0)
- 1:   synapsis defective [WBPhenotype:0001813](1|1) (1|0|0)
- 1:   synapsis formation variant [WBPhenotype:0002113](0|0) (0|0|0)
- 1:   synapsis maintenance defective [WBPhenotype:0002112](0|0) (0|0|0)
- 1:   univalent meiotic chromosomes [WBPhenotype:0002013](2|2) (2|1|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
The spindle assembly checkpoint protein mad20Direct
LEM domain0Direct
Skp1 dimerisation domain-like0Direct
Histone-fold0.000000000001155Direct
F1F0 ATP synthase subunit C0.00001598Direct
Activating enzymes of the ubiquitin-like proteins0.0001917Direct
POZ domain0.0006381Direct
SNARE-like0.08855Inherited
P-loop containing nucleoside triphosphate hydrolases0.1624Inherited
Smc hinge domain0.2393Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.532Inherited
GroEL equatorial domain-like0.5665Inherited
GroEL-intermediate domain like0.5665Inherited
GroEL apical domain-like0.5665Inherited
"Winged helix" DNA-binding domain0.6723Inherited
Protein kinase-like (PK-like)0.8454Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
LEM domain0Direct
Skp1 dimerisation domain-like0Direct
Nucleosome core histones0.000000000000626Direct
F1F0 ATP synthase subunit C0.00002287Direct
BTB/POZ domain0.00003456Direct
Nitrogenase iron protein-like0.001112Inherited
Motor proteins0.07169Inherited
Smc hinge domain0.07586Inherited
RecA protein-like (ATPase-domain)0.2149Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.3793Inherited
Proteasome subunits0.3947Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.5358Inherited
Group II chaperonin (CCT, TRIC), apical domain0.5358Inherited
Protein kinases, catalytic subunit0.8306Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
The spindle assembly checkpoint protein mad20Direct
Skp1 dimerisation domain-like0Direct
LEM domain0Direct
Histone-fold0.0000000000009165Direct
F1F0 ATP synthase subunit C0.00001311Direct
Activating enzymes of the ubiquitin-like proteins0.0001586Direct
POZ domain0.0005322Direct
SNARE-like0.07969Inherited
P-loop containing nucleoside triphosphate hydrolases0.1487Inherited
Smc hinge domain0.2219Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.5099Inherited
GroEL-intermediate domain like0.5443Inherited
GroEL equatorial domain-like0.5443Inherited
GroEL apical domain-like0.5443Inherited
"Winged helix" DNA-binding domain0.6513Inherited
Protein kinase-like (PK-like)0.8281Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000002779Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.5443Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.5443Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.5443Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)