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Worm Phenotype (WP): cell component morphology variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <4>
+ + 2:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ 1:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
0:   cell component morphology variant [WBPhenotype:0002089] <19>(81|85) (81|43|9)
- 1:   cell organization biogenesis variant [WBPhenotype:0010002] <6>(39|44) (40|19|4)
- 1:   nuclear appearance variant [WBPhenotype:0001028] <6>(12|14) (12|7|0)
- 1:   cilia morphology variant [WBPhenotype:0000615] <5>(1|0) (1|1|0)
- 1:   mitochondria morphology variant [WBPhenotype:0001401] <3>(17|18) (18|11|2)
- 1:   extracellular matrix variant [WBPhenotype:0001523] <2>(0|0) (0|0|0)
- 1:   germ cell cytoplasmic morphology variant [WBPhenotype:0001300] <2>(12|8) (12|5|2)
- 1:   synapse morphology variant [WBPhenotype:0000616] <2>(4|4) (4|3|1)
- 1:   vesicle organization variant [WBPhenotype:0001671] <2>(14|12) (15|5|1)
- 1:   cell membrane morphology variant [WBPhenotype:0001399] <1>(2|1) (2|0|0)
- 1:   endoplasmic reticulum morphology variant [WBPhenotype:0001880] <1>(3|4) (3|3|2)
- 1:   neurite morphology variant [WBPhenotype:0001398] <1>(13|8) (13|4|2)
- 1:   annulae morphology variant [WBPhenotype:0001517](1|1) (1|0|0)
- 1:   egg size defective early emb [WBPhenotype:0000044](0|0) (1|0|0)
- 1:   golgi apparatus morphology variant [WBPhenotype:0002096](0|0) (0|0|0)
- 1:   lysosome morphology variant [WBPhenotype:0002097](2|2) (2|0|0)
- 1:   lysosome-related organelle morphology variant [WBPhenotype:0002095](7|7) (7|3|0)
- 1:   peroxisome morphology variant [WBPhenotype:0001263](0|0) (0|0|0)
- 1:   sensilium sheath cell variant [WBPhenotype:0001529](0|0) (0|0|0)
- 1:   struts variant [WBPhenotype:0001515](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Profilin (actin-binding protein)0Direct
RBP11-like subunits of RNA polymerase0Direct
GroEL equatorial domain-like0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Helical domain of Sec23/240Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
LEM domain0Direct
Heme-dependent catalase-like0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
GroEL-intermediate domain like0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Skp1 dimerisation domain-like0.0000000002659Direct
Tubulin C-terminal domain-like0.000000008976Direct
Tubulin nucleotide-binding domain-like0.00000004642Direct
SNARE-like0.00000005621Direct
Class II aaRS and biotin synthetases0.0000271Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00007906Direct
Lamin A/C globular tail domain0.000123Direct
Intermediate filament protein, coiled coil region0.000123Direct
Ribosomal proteins S24e, L23 and L15e0.0002912Direct
ValRS/IleRS/LeuRS editing domain0.0002912Direct
Translation proteins SH3-like domain0.0003065Direct
Activating enzymes of the ubiquitin-like proteins0.000906Direct
Calpain large subunit, middle domain (domain III)0.000906Direct
Riboflavin synthase domain-like0.000906Direct
Class II aaRS ABD-related0.000906Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.000906Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.001222Inherited
beta-sandwich domain of Sec23/240.001685Inherited
Cdc48 domain 2-like0.001685Inherited
ADC-like0.001685Inherited
Zn-binding ribosomal proteins0.00398Inherited
F1F0 ATP synthase subunit C0.006673Inherited
CAD & PB1 domains0.006673Inherited
L30e-like0.01602Inherited
Histone-fold0.01614Inherited
Nucleic acid-binding proteins0.02624Inherited
EGF/Laminin0.03125Inherited
Cyclin-like0.04863Inherited
SH2 domain0.05262Inherited
Actin-like ATPase domain0.07424Inherited
DNA/RNA polymerases0.1046Inherited
Sm-like ribonucleoproteins0.1459Inherited
GTPase activation domain, GAP0.1909Inherited
PDZ domain-like0.1909Inherited
Transducin (alpha subunit), insertion domain0.2024Inherited
SNARE fusion complex0.2399Inherited
GroEL apical domain-like0.2399Inherited
"Winged helix" DNA-binding domain0.2403Inherited
PH domain-like0.2745Inherited
ARM repeat0.2752Inherited
Concanavalin A-like lectins/glucanases0.2791Inherited
Nucleotidylyl transferase0.2819Inherited
P-loop containing nucleoside triphosphate hydrolases0.2857Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.3207Inherited
t-snare proteins0.3306Inherited
DBL homology domain (DH-domain)0.3306Inherited
SH3-domain0.3776Inherited
Second domain of FERM0.4522Inherited
Prefoldin0.4522Inherited
SMAD/FHA domain0.4522Inherited
(Phosphotyrosine protein) phosphatases II0.4729Inherited
WD40 repeat-like0.5664Inherited
Integrin domains0.6098Inherited
PYP-like sensor domain (PAS domain)0.6098Inherited
TPR-like0.701Inherited
POZ domain0.7723Inherited
Immunoglobulin0.781Inherited
dsRNA-binding domain-like0.7918Inherited
Spectrin repeat0.7918Inherited
Voltage-gated potassium channels0.8034Inherited
Fibronectin type III0.8054Inherited
Protein kinase-like (PK-like)0.8144Inherited
CCCH zinc finger0.885Inherited
Calponin-homology domain, CH-domain0.9013Inherited
Cysteine-rich domain0.9099Inherited
NAD(P)-binding Rossmann-fold domains1Inherited
EF-hand1Inherited
RNA-binding domain, RBD1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
LEM domain0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Phoshoinositide 3-kinase (PI3K) helical domain0Direct
Integrin domains0Direct
beta-sandwich domain of Sec23/240Direct
Group II chaperonin (CCT, TRIC), ATPase domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Profilin (actin-binding protein)0Direct
Heme-dependent catalases0Direct
Anticodon-binding domain of Class II aaRS0Direct
Trunk domain of Sec23/240Direct
Skp1 dimerisation domain-like0.0000000008167Direct
Tubulin, C-terminal domain0.00000007147Direct
BCR-homology GTPase activation domain (BH-domain)0.0000001533Direct
Tubulin, GTPase domain0.00000031Direct
Proteasome subunits0.0000003248Direct
Pumilio repeat0.000006194Direct
Clathrin coat assembly domain0.00002052Direct
Clathrin adaptor core protein0.00002052Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.00002857Direct
PDZ domain0.00003466Direct
Armadillo repeat0.00008852Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.0001046Direct
Laminin-type module0.0001046Direct
RecA protein-like (ATPase-domain)0.0001046Direct
Intermediate filament protein, coiled coil region0.0003405Direct
Ubiquitin activating enzymes (UBA)0.0005267Direct
ValRS/IleRS/LeuRS editing domain0.0005267Direct
Smc hinge domain0.0005267Direct
BAR domain0.0005267Direct
Prefoldin0.0005798Direct
Extended AAA-ATPase domain0.0006451Direct
Calpain large subunit, middle domain (domain III)0.00185Inherited
Cdc48 N-terminal domain-like0.002611Inherited
Anticodon-binding domain0.002611Inherited
Ferredoxin reductase FAD-binding domain-like0.002611Inherited
Cdc48 domain 2-like0.002611Inherited
Nucleosome core histones0.004582Inherited
F1F0 ATP synthase subunit C0.01029Inherited
DEP domain0.01029Inherited
Translational machinery components0.01502Inherited
Laminin G-like module0.01613Inherited
Cyclin0.02092Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.02092Inherited
Cold shock DNA-binding domain-like0.03364Inherited
DNA polymerase I0.04693Inherited
BTB/POZ domain0.04937Inherited
SH2 domain0.04937Inherited
Calpain large subunit, catalytic domain (domain II)0.0572Inherited
Elongation factors0.06463Inherited
G proteins0.0665Inherited
Actin/HSP700.09798Inherited
DnaQ-like 3'-5' exonuclease0.1029Inherited
I set domains0.1163Inherited
FHA domain0.1267Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.2282Inherited
SNARE fusion complex0.2693Inherited
Group II chaperonin (CCT, TRIC), apical domain0.2693Inherited
Transducin (alpha subunit), insertion domain0.3149Inherited
DBL homology domain (DH-domain)0.3175Inherited
Phosphotyrosine-binding domain (PTB)0.3175Inherited
t-snare proteins0.3175Inherited
SH3-domain0.3755Inherited
Pleckstrin-homology domain (PH domain)0.3836Inherited
Second domain of FERM0.4372Inherited
Third domain of FERM0.5104Inherited
First domain of FERM0.594Inherited
Ubiquitin-related0.7154Inherited
LIM domain0.7154Inherited
Protein kinases, catalytic subunit0.7566Inherited
Spectrin repeat0.7791Inherited
Fibronectin type III0.8008Inherited
WD40-repeat0.8211Inherited
Motor proteins0.8403Inherited
CCCH zinc finger0.8759Inherited
Calponin-homology domain, CH-domain0.8968Inherited
Voltage-gated potassium channels0.9596Inherited
Calmodulin-like1Inherited
Canonical RBD1Inherited
Tandem AAA-ATPase domain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GroEL-intermediate domain like0Direct
Subdomain of clathrin and coatomer appendage domain0Direct
GroEL equatorial domain-like0Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0Direct
Heme-dependent catalase-like0Direct
Helical domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
RBP11-like subunits of RNA polymerase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Profilin (actin-binding protein)0Direct
LEM domain0Direct
Skp1 dimerisation domain-like0.0000000002123Direct
Tubulin C-terminal domain-like0.000000007209Direct
Tubulin nucleotide-binding domain-like0.00000003742Direct
SNARE-like0.00000004533Direct
Class II aaRS and biotin synthetases0.00002226Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0000652Direct
Intermediate filament protein, coiled coil region0.0001017Direct
Lamin A/C globular tail domain0.0001017Direct
ValRS/IleRS/LeuRS editing domain0.0002414Direct
Ribosomal proteins S24e, L23 and L15e0.0002414Direct
Translation proteins SH3-like domain0.0002542Direct
Class II aaRS ABD-related0.0007586Direct
Riboflavin synthase domain-like0.0007586Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.0007586Direct
Calpain large subunit, middle domain (domain III)0.0007586Direct
Activating enzymes of the ubiquitin-like proteins0.0007586Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.001025Inherited
beta-sandwich domain of Sec23/240.001418Inherited
ADC-like0.001418Inherited
Cdc48 domain 2-like0.001418Inherited
Zn-binding ribosomal proteins0.003381Inherited
F1F0 ATP synthase subunit C0.005705Inherited
CAD & PB1 domains0.005705Inherited
L30e-like0.01388Inherited
Histone-fold0.01398Inherited
Nucleic acid-binding proteins0.02296Inherited
EGF/Laminin0.02745Inherited
Cyclin-like0.04314Inherited
SH2 domain0.0467Inherited
Actin-like ATPase domain0.06651Inherited
DNA/RNA polymerases0.09456Inherited
Sm-like ribonucleoproteins0.1333Inherited
GTPase activation domain, GAP0.1756Inherited
PDZ domain-like0.1756Inherited
Transducin (alpha subunit), insertion domain0.1865Inherited
GroEL apical domain-like0.2225Inherited
SNARE fusion complex0.2225Inherited
"Winged helix" DNA-binding domain0.2228Inherited
PH domain-like0.256Inherited
ARM repeat0.2567Inherited
Concanavalin A-like lectins/glucanases0.2604Inherited
Nucleotidylyl transferase0.2632Inherited
P-loop containing nucleoside triphosphate hydrolases0.2669Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.301Inherited
DBL homology domain (DH-domain)0.3108Inherited
t-snare proteins0.3108Inherited
SH3-domain0.3572Inherited
Prefoldin0.4307Inherited
Second domain of FERM0.4307Inherited
SMAD/FHA domain0.4307Inherited
(Phosphotyrosine protein) phosphatases II0.4511Inherited
WD40 repeat-like0.5442Inherited
PYP-like sensor domain (PAS domain)0.5877Inherited
Integrin domains0.5877Inherited
TPR-like0.6805Inherited
POZ domain0.7528Inherited
Immunoglobulin0.7615Inherited
Spectrin repeat0.7725Inherited
dsRNA-binding domain-like0.7725Inherited
Voltage-gated potassium channels0.7845Inherited
Fibronectin type III0.7864Inherited
Protein kinase-like (PK-like)0.7959Inherited
CCCH zinc finger0.8693Inherited
Calponin-homology domain, CH-domain0.8859Inherited
Cysteine-rich domain0.895Inherited
EF-hand1Inherited
NAD(P)-binding Rossmann-fold domains1Inherited
RNA-binding domain, RBD1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    49562,48371
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 0Direct
    49348,55711
  • 49348 - Clathrin adaptor appendage domain
  • 55711 - Subdomain of clathrin and coatomer appendage domain
  • 0Direct
    81383,50978
  • 81383 - F-box domain
  • 50978 - WD40 repeat-like
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.0000000002569Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.00000003742Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00002021Direct
    64593,74853
  • 64593 - Intermediate filament protein, coiled coil region
  • 74853 - Lamin A/C globular tail domain
  • 0.0002302Direct
    54001,49758
  • 54001 - Cysteine proteinases
  • 49758 - Calpain large subunit, middle domain (domain III)
  • 0.0002302Direct
    50677,52374
  • 50677 - ValRS/IleRS/LeuRS editing domain
  • 52374 - Nucleotidylyl transferase
  • 0.0002414Direct
    50978,50978
  • 50978 - WD40 repeat-like
  • 50978 - WD40 repeat-like
  • 0.0005518Direct
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.0007586Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.001075Inherited
    63380,52343
  • 63380 - Riboflavin synthase domain-like
  • 52343 - Ferredoxin reductase-like, C-terminal NADP-linked domain
  • 0.001174Inherited
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.001418Inherited
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.001418Inherited
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.003381Inherited
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.005705Inherited
    53098,56672
  • 53098 - Ribonuclease H-like
  • 56672 - DNA/RNA polymerases
  • 0.01403Inherited
    57625,57625
  • 57625 - Invertebrate chitin-binding proteins
  • 57625 - Invertebrate chitin-binding proteins
  • 0.01403Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.02083Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.02729Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.06651Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.0687Inherited
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.1865Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.405Inherited
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.4271Inherited
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.4307Inherited
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.4307Inherited
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.5041Inherited
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.5041Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.5256Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.5799Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.8221Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.959Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 1Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    49562,48371,56112
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48371 - ARM repeat
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    57625,57625,57625
  • 57625 - Invertebrate chitin-binding proteins
  • 57625 - Invertebrate chitin-binding proteins
  • 57625 - Invertebrate chitin-binding proteins
  • 0.005705Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.2958Inherited
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.3108Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.367Inherited
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.5041Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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