SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): endosome morphology variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <4>
+ + + + + 5:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + + + 4:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
+ + + 3:   cell component morphology variant [WBPhenotype:0002089] <19>(81|85) (81|43|9)
+ + 2:   vesicle organization variant [WBPhenotype:0001671] <2>(14|12) (15|5|1)
+ 1:   vesicle morphology variant [WBPhenotype:0001323] <3>(14|12) (15|5|1)
0:   endosome morphology variant [WBPhenotype:0002090] <3>(12|11) (13|5|1)
- 1:   recycling endosome morphology variant [WBPhenotype:0002093] <2>(11|11) (11|5|1)
- 1:   early endosome morphology variant [WBPhenotype:0002092](1|0) (1|0|0)
- 1:   late endosome morphology variant [WBPhenotype:0002091](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Histone-fold0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL equatorial domain-like0.0000000695Direct
GroEL-intermediate domain like0.0000000695Direct
GroEL apical domain-like0.0000001679Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000001043Direct
Riboflavin synthase domain-like0.000001766Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.000001766Direct
F1F0 ATP synthase subunit C0.000006438Direct
Sm-like ribonucleoproteins0.00001152Direct
Protein kinase-like (PK-like)1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Nucleosome core histones0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Proteasome subunits0.000000004905Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00000005478Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000001587Direct
RecA protein-like (ATPase-domain)0.0000003915Direct
Ferredoxin reductase FAD-binding domain-like0.000002152Direct
F1F0 ATP synthase subunit C0.00001019Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00006366Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Histone-fold0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL-intermediate domain like0.00000005606Direct
GroEL equatorial domain-like0.00000005606Direct
GroEL apical domain-like0.0000001357Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0000008487Direct
Riboflavin synthase domain-like0.000001441Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.000001441Direct
F1F0 ATP synthase subunit C0.000005265Direct
Sm-like ribonucleoproteins0.000009429Direct
WD40 repeat-like0.0009167Direct
Protein kinase-like (PK-like)1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000005606Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00000005606Direct
    63380,52343
  • 63380 - Riboflavin synthase domain-like
  • 52343 - Ferredoxin reductase-like, C-terminal NADP-linked domain
  • 0.0000001659Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000001105Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000005606Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)