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Worm Phenotype (WP): recycling endosome morphology variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + + 6:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + + + + 5:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
+ + + + 4:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + 4:   cell component morphology variant [WBPhenotype:0002089] <17>(84|85) (84|42|9)
+ + + 3:   vesicle organization variant [WBPhenotype:0001671] <2>(15|13) (15|5|1)
+ + 2:   vesicle morphology variant [WBPhenotype:0001323] <3>(13|12) (13|5|1)
+ 1:   endosome morphology variant [WBPhenotype:0002090] <3>(12|11) (12|5|1)
0:   recycling endosome morphology variant [WBPhenotype:0002093] <2>(11|11) (11|5|1)
- 1:   RAB-11 recycling endosome morphology variant [WBPhenotype:0002094](0|0) (0|0|0)
- 1:   RME-1 recycling endosome morphology variant [WBPhenotype:0002110](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Histone-fold0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
GroEL-intermediate domain like0.00000006652Direct
GroEL equatorial domain-like0.00000006652Direct
GroEL apical domain-like0.0000001607Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0000009825Direct
Riboflavin synthase domain-like0.000001704Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.000001704Direct
F1F0 ATP synthase subunit C0.000006243Direct
Sm-like ribonucleoproteins0.00001101Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleosome core histones0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Proteasome subunits0.000000004341Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0000000499Direct
Group II chaperonin (CCT, TRIC), apical domain0.0000001444Direct
RecA protein-like (ATPase-domain)0.0000003614Direct
Ferredoxin reductase FAD-binding domain-like0.000002017Direct
F1F0 ATP synthase subunit C0.000009555Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00005901Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Histone-fold0Direct
GroEL equatorial domain-like0.00000005324Direct
GroEL-intermediate domain like0.00000005324Direct
GroEL apical domain-like0.0000001289Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0000007937Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0.000001379Direct
Riboflavin synthase domain-like0.000001379Direct
F1F0 ATP synthase subunit C0.000005075Direct
Sm-like ribonucleoproteins0.000008959Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00000005324Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000005324Direct
    63380,52343
  • 63380 - Riboflavin synthase domain-like
  • 52343 - Ferredoxin reductase-like, C-terminal NADP-linked domain
  • 0.0000001587Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000001067Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00000005324Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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