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Worm Phenotype (WP): cell component localization variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <4>
+ + 2:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ 1:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
0:   cell component localization variant [WBPhenotype:0002098] <8>(22|24) (23|12|3)
- 1:   endosome localization variant [WBPhenotype:0002100] <3>(9|10) (9|4|1)
- 1:   mitochondria spacing variant [WBPhenotype:0001576] <1>(13|14) (14|8|2)
- 1:   endoplasmic reticulum localization variant [WBPhenotype:0002101](0|0) (0|0|0)
- 1:   golgi apparatus localization variant [WBPhenotype:0002102](0|0) (0|0|0)
- 1:   lysosome localization variant [WBPhenotype:0002103](0|0) (0|0|0)
- 1:   lysosome-related organelle localization variant [WBPhenotype:0002099](0|0) (0|0|0)
- 1:   mitochondria localization variant [WBPhenotype:0002379](0|0) (0|0|0)
- 1:   ribosome localization variant [WBPhenotype:0002477](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Histone-fold0Direct
SH2 domain0.00000001655Direct
F1F0 ATP synthase subunit C0.00001678Direct
SH3-domain0.00003043Direct
Second domain of FERM0.00007015Direct
PH domain-like0.0004479Direct
Tubulin C-terminal domain-like0.001009Inherited
GroEL equatorial domain-like0.003086Inherited
GroEL-intermediate domain like0.003086Inherited
Tubulin nucleotide-binding domain-like0.003491Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.006168Inherited
GroEL apical domain-like0.006248Inherited
Actin-like ATPase domain0.008699Inherited
DBL homology domain (DH-domain)0.01122Inherited
Sm-like ribonucleoproteins0.02822Inherited
Spectrin repeat0.03787Inherited
Cysteine-rich domain0.04076Inherited
Calponin-homology domain, CH-domain0.05794Inherited
(Phosphotyrosine protein) phosphatases II0.06039Inherited
Protein kinase-like (PK-like)0.1474Inherited
GTPase activation domain, GAP0.1791Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.2793Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleosome core histones0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
SH2 domain0.0000000788Direct
F1F0 ATP synthase subunit C0.00003105Direct
SH3-domain0.00004732Direct
Second domain of FERM0.00007452Direct
Third domain of FERM0.0003974Direct
Tubulin, C-terminal domain0.00117Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.001356Inherited
LIM domain0.001356Inherited
Proteasome subunits0.001979Inherited
First domain of FERM0.002089Inherited
Group II chaperonin (CCT, TRIC), apical domain0.003315Inherited
Tubulin, GTPase domain0.003901Inherited
Actin/HSP700.003951Inherited
RecA protein-like (ATPase-domain)0.008332Inherited
DBL homology domain (DH-domain)0.01176Inherited
Pleckstrin-homology domain (PH domain)0.01255Inherited
Sm motif of small nuclear ribonucleoproteins, SNRNP0.03579Inherited
Spectrin repeat0.03893Inherited
Calponin-homology domain, CH-domain0.06512Inherited
BCR-homology GTPase activation domain (BH-domain)0.1713Inherited
Protein kinases, catalytic subunit0.1958Inherited
I set domains0.3223Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Histone-fold0Direct
SH2 domain0.00000001331Direct
F1F0 ATP synthase subunit C0.00001377Direct
SH3-domain0.00002501Direct
Second domain of FERM0.0000578Direct
PH domain-like0.0003722Direct
Tubulin C-terminal domain-like0.000846Direct
GroEL-intermediate domain like0.002613Inherited
GroEL equatorial domain-like0.002613Inherited
Tubulin nucleotide-binding domain-like0.002962Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.005268Inherited
GroEL apical domain-like0.005337Inherited
Actin-like ATPase domain0.007474Inherited
DBL homology domain (DH-domain)0.009667Inherited
Sm-like ribonucleoproteins0.02473Inherited
Spectrin repeat0.03343Inherited
Cysteine-rich domain0.03603Inherited
Calponin-homology domain, CH-domain0.05154Inherited
(Phosphotyrosine protein) phosphatases II0.05378Inherited
Protein kinase-like (PK-like)0.1347Inherited
GTPase activation domain, GAP0.1645Inherited
Fibronectin type III0.2268Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.2607Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.000002922Direct
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.000002922Direct
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.0000578Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0002296Direct
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.0003256Direct
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.001799Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.002613Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.002613Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.002962Inherited
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.007161Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.007474Inherited
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.01862Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00006579Direct
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.0003256Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.002613Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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