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Worm Phenotype (WP): endosome localization variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <2>
+ + + 3:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + 2:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
+ 1:   cell component localization variant [WBPhenotype:0002098] <8>(22|24) (23|12|3)
0:   endosome localization variant [WBPhenotype:0002100] <3>(9|10) (9|4|1)
- 1:   recycling endosome localization variant [WBPhenotype:0002104] <2>(9|10) (9|4|1)
- 1:   early endosome localization variant [WBPhenotype:0002106](0|0) (0|0|0)
- 1:   late endosome localization variant [WBPhenotype:0002105](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Histone-fold0Direct
GroEL-intermediate domain like0.000000008186Direct
GroEL equatorial domain-like0.000000008186Direct
GroEL apical domain-like0.00000002002Direct
Sm-like ribonucleoproteins0.000001474Direct
F1F0 ATP synthase subunit C0.000001562Direct
Tubulin C-terminal domain-like0.02804Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.04925Inherited
Tubulin nucleotide-binding domain-like0.04925Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleosome core histones0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.000000007566Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000002211Direct
F1F0 ATP synthase subunit C0.000002751Direct
RecA protein-like (ATPase-domain)0.000007948Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00001308Direct
Tubulin, C-terminal domain0.0221Inherited
Tubulin, GTPase domain0.03988Inherited
Proteasome subunits0.03988Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Histone-fold0Direct
GroEL equatorial domain-like0.000000006525Direct
GroEL-intermediate domain like0.000000006525Direct
GroEL apical domain-like0.00000001598Direct
Sm-like ribonucleoproteins0.000001193Direct
F1F0 ATP synthase subunit C0.000001265Direct
Tubulin C-terminal domain-like0.02459Inherited
Tubulin nucleotide-binding domain-like0.04363Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.04363Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000000006525Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000006525Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0000002626Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.04363Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000006525Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)