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Worm Phenotype (WP): endosome localization variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + 2:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
+ 1:   cell component localization variant [WBPhenotype:0002098] <8>(22|24) (23|12|3)
0:   endosome localization variant [WBPhenotype:0002100] <3>(9|10) (9|4|1)
- 1:   recycling endosome localization variant [WBPhenotype:0002104] <2>(9|10) (9|4|1)
- 1:   early endosome localization variant [WBPhenotype:0002106](0|0) (0|0|0)
- 1:   late endosome localization variant [WBPhenotype:0002105](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Histone-fold0Direct
GroEL equatorial domain-like0.000000007354Direct
GroEL-intermediate domain like0.000000007354Direct
GroEL apical domain-like0.00000001797Direct
Sm-like ribonucleoproteins0.000001328Direct
F1F0 ATP synthase subunit C0.000001452Direct
Tubulin C-terminal domain-like0.02699Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.04762Inherited
Tubulin nucleotide-binding domain-like0.04762Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleosome core histones0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00000000703Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000002057Direct
F1F0 ATP synthase subunit C0.000002628Direct
RecA protein-like (ATPase-domain)0.000007602Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00001238Direct
Tubulin, C-terminal domain0.02178Inherited
Tubulin, GTPase domain0.03932Inherited
Proteasome subunits0.03932Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Histone-fold0Direct
GroEL-intermediate domain like0.000000005902Direct
GroEL equatorial domain-like0.000000005902Direct
GroEL apical domain-like0.00000001445Direct
Sm-like ribonucleoproteins0.000001083Direct
F1F0 ATP synthase subunit C0.000001184Direct
Tubulin C-terminal domain-like0.02363Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.04221Inherited
Tubulin nucleotide-binding domain-like0.04221Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000005902Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000000005902Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0000002456Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.04221Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000005902Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)