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Worm Phenotype (WP): recycling endosome localization variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <4>
+ + + + 4:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ + + 3:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
+ + 2:   cell component localization variant [WBPhenotype:0002098] <8>(22|24) (23|12|3)
+ 1:   endosome localization variant [WBPhenotype:0002100] <3>(9|10) (9|4|1)
0:   recycling endosome localization variant [WBPhenotype:0002104] <2>(9|10) (9|4|1)
- 1:   RAB-11 recycling endosome localization variant [WBPhenotype:0002107](9|10) (9|4|1)
- 1:   RME-1 recycling endosome localization variant [WBPhenotype:0002111](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Histone-fold0Direct
GroEL equatorial domain-like0.000000006851Direct
GroEL-intermediate domain like0.000000006851Direct
GroEL apical domain-like0.00000001675Direct
Tubulin C-terminal domain-like0.00000002372Direct
Tubulin nucleotide-binding domain-like0.0000005599Direct
Sm-like ribonucleoproteins0.000001241Direct
F1F0 ATP synthase subunit C0.000001386Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00002046Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleosome core histones0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.000000006482Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000001897Direct
Tubulin, C-terminal domain0.00000008038Direct
Proteasome subunits0.0000005995Direct
Tubulin, GTPase domain0.00000152Direct
F1F0 ATP synthase subunit C0.000002491Direct
RecA protein-like (ATPase-domain)0.000007209Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0000116Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Histone-fold0Direct
GroEL-intermediate domain like0.000000005497Direct
GroEL equatorial domain-like0.000000005497Direct
GroEL apical domain-like0.00000001346Direct
Tubulin C-terminal domain-like0.00000001909Direct
Tubulin nucleotide-binding domain-like0.0000004542Direct
Sm-like ribonucleoproteins0.000001011Direct
F1F0 ATP synthase subunit C0.00000113Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00001679Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000005497Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000000005497Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0000002342Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.0000004542Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000005497Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)