SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): recycling endosome localization variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + + 3:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
+ + 2:   cell component localization variant [WBPhenotype:0002098] <8>(22|24) (23|12|3)
+ 1:   endosome localization variant [WBPhenotype:0002100] <3>(9|10) (9|4|1)
0:   recycling endosome localization variant [WBPhenotype:0002104] <2>(9|10) (9|4|1)
- 1:   RAB-11 recycling endosome localization variant [WBPhenotype:0002107](9|10) (9|4|1)
- 1:   RME-1 recycling endosome localization variant [WBPhenotype:0002111](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Histone-fold0Direct
GroEL-intermediate domain like0.000000007638Direct
GroEL equatorial domain-like0.000000007638Direct
GroEL apical domain-like0.00000001868Direct
Tubulin C-terminal domain-like0.00000002691Direct
Tubulin nucleotide-binding domain-like0.0000006218Direct
Sm-like ribonucleoproteins0.00000138Direct
F1F0 ATP synthase subunit C0.000001493Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00002261Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Nucleosome core histones0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.000000006983Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000002042Direct
Tubulin, C-terminal domain0.00000008745Direct
Proteasome subunits0.0000006433Direct
Tubulin, GTPase domain0.000001629Direct
F1F0 ATP synthase subunit C0.000002611Direct
RecA protein-like (ATPase-domain)0.000007544Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00001227Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Histone-fold0Direct
GroEL equatorial domain-like0.000000006088Direct
GroEL-intermediate domain like0.000000006088Direct
GroEL apical domain-like0.00000001491Direct
Tubulin C-terminal domain-like0.00000002149Direct
Tubulin nucleotide-binding domain-like0.0000005016Direct
Sm-like ribonucleoproteins0.000001116Direct
F1F0 ATP synthase subunit C0.000001208Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00001843Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000000006088Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000006088Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0000002508Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.0000005016Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000006088Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)