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Worm Phenotype (WP): RAB-11 recycling endosome localization variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   Variant [WBPhenotype:0000886] <2>
+ + + + + 5:   morphology variant [WBPhenotype:0000520] <5>(443|528) (444|229|63)
+ + + + 4:   cell morphology variant [WBPhenotype:0000533] <10>(104|103) (106|55|17)
+ + + 3:   cell component localization variant [WBPhenotype:0002098] <8>(22|24) (23|12|3)
+ + 2:   endosome localization variant [WBPhenotype:0002100] <3>(9|10) (9|4|1)
+ 1:   recycling endosome localization variant [WBPhenotype:0002104] <2>(9|10) (9|4|1)
0:   RAB-11 recycling endosome localization variant [WBPhenotype:0002107](9|10) (9|4|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Histone-fold0Direct
GroEL-intermediate domain like0.000000007376Direct
GroEL equatorial domain-like0.000000007376Direct
GroEL apical domain-like0.00000001804Direct
Tubulin C-terminal domain-like0.00000002584Direct
Tubulin nucleotide-binding domain-like0.0000006011Direct
Sm-like ribonucleoproteins0.000001333Direct
F1F0 ATP synthase subunit C0.000001459Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00002188Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleosome core histones0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.000000006706Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000001961Direct
Tubulin, C-terminal domain0.0000000835Direct
Proteasome subunits0.0000006183Direct
Tubulin, GTPase domain0.000001567Direct
F1F0 ATP synthase subunit C0.000002541Direct
RecA protein-like (ATPase-domain)0.000007345Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00001188Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Histone-fold0Direct
GroEL equatorial domain-like0.000000005879Direct
GroEL-intermediate domain like0.000000005879Direct
GroEL apical domain-like0.0000000144Direct
Tubulin C-terminal domain-like0.00000002064Direct
Tubulin nucleotide-binding domain-like0.0000004848Direct
Sm-like ribonucleoproteins0.000001078Direct
F1F0 ATP synthase subunit C0.00000118Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00001784Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000000005879Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000005879Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.0000002449Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.0000004848Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000005879Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)