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Worm Phenotype (WP): cell type morphology variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <4>
+ + 2:   morphology variant [WBPhenotype:0000520] <9>(440|519) (440|228|63)
+ 1:   cell morphology variant [WBPhenotype:0000533] <11>(104|105) (106|54|17)
0:   cell type morphology variant [WBPhenotype:0002108] <12>(79|80) (81|44|15)
- 1:   embryonic cell morphology variant [WBPhenotype:0000770] <7>(6|8) (6|4|0)
- 1:   epithelial cell morphology variant [WBPhenotype:0000899] <5>(6|3) (6|1|1)
- 1:   neuron morphology variant [WBPhenotype:0000905] <5>(14|9) (14|5|2)
- 1:   germ cell morphology variant [WBPhenotype:0000900] <4>(45|41) (46|22|8)
- 1:   muscle cell morphology variant [WBPhenotype:0000904] <4>(23|27) (23|16|6)
- 1:   germline precursor cell morphology variant [WBPhenotype:0002485] <1>(0|0) (0|0|0)
- 1:   gland cell morphology variant [WBPhenotype:0000901] <1>(0|0) (0|0|0)
- 1:   intestinal cell morphology variant [WBPhenotype:0000902] <1>(0|0) (0|0|0)
- 1:   blast cell morphology variant [WBPhenotype:0000898](0|0) (0|0|0)
- 1:   distal tip cell morphology variant [WBPhenotype:0000196](0|0) (0|0|0)
- 1:   linker cell morphology variant [WBPhenotype:0002139](0|0) (0|0|0)
- 1:   uterine vulval cell morphology variant [WBPhenotype:0000906](0|0) (0|0|0)


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Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Helical domain of Sec23/240Direct
Integrin alpha N-terminal domain0Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Zn-finger domain of Sec23/240Direct
Integrin domains0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Sm-like ribonucleoproteins0.00000001508Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00003919Direct
Spectrin repeat0.00007853Direct
Cysteine-rich domain0.00008036Direct
Translation proteins SH3-like domain0.0001981Direct
Ribosomal proteins S24e, L23 and L15e0.0002167Direct
P-loop containing nucleoside triphosphate hydrolases0.0005826Direct
Calpain large subunit, middle domain (domain III)0.0006494Direct
Class II aaRS ABD-related0.0006494Direct
Metal cation-transporting ATPase, ATP-binding domain N0.001032Inherited
beta-sandwich domain of Sec23/240.001337Inherited
Cdc48 domain 2-like0.001337Inherited
Annexin0.001337Inherited
ADC-like0.001337Inherited
Calcium ATPase, transmembrane domain M0.001597Inherited
CCCH zinc finger0.00257Inherited
Zn-binding ribosomal proteins0.003035Inherited
PLC-like phosphodiesterases0.003082Inherited
Calcium ATPase, transduction domain A0.003165Inherited
F1F0 ATP synthase subunit C0.005349Inherited
S15/NS1 RNA-binding domain0.005349Inherited
PYP-like sensor domain (PAS domain)0.006667Inherited
Nucleic acid-binding proteins0.007145Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.007145Inherited
Myosin rod fragments0.0125Inherited
L30e-like0.0125Inherited
Translational machinery components0.01312Inherited
Second domain of FERM0.01751Inherited
Calponin-homology domain, CH-domain0.01818Inherited
SH2 domain0.01818Inherited
ACP-like0.0254Inherited
Actin-like ATPase domain0.02889Inherited
Fibronectin type III0.05565Inherited
SH3-domain0.06554Inherited
RNA-binding domain, RBD0.07215Inherited
Tubulin C-terminal domain-like0.07217Inherited
SMAD/FHA domain0.08346Inherited
DNA/RNA polymerases0.08519Inherited
Tubulin nucleotide-binding domain-like0.09034Inherited
Class II aaRS and biotin synthetases0.1129Inherited
PH domain-like0.1384Inherited
Concanavalin A-like lectins/glucanases0.1408Inherited
Ribosomal protein S5 domain 2-like0.141Inherited
Immunoglobulin0.1695Inherited
DBL homology domain (DH-domain)0.2187Inherited
Cyclin-like0.2187Inherited
EF-hand0.2218Inherited
Protein kinase-like (PK-like)0.2241Inherited
GTPase activation domain, GAP0.2325Inherited
ARM repeat0.261Inherited
dsRNA-binding domain-like0.2715Inherited
Sec1/munc18-like (SM) proteins0.3346Inherited
Prefoldin0.3346Inherited
Troponin coil-coiled subunits0.3346Inherited
EGF/Laminin0.3608Inherited
Activating enzymes of the ubiquitin-like proteins0.4113Inherited
Translation proteins0.4416Inherited
GroEL apical domain-like0.4416Inherited
RBP11-like subunits of RNA polymerase0.5028Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.5028Inherited
GroEL equatorial domain-like0.5073Inherited
GroEL-intermediate domain like0.5073Inherited
HAD-like0.5454Inherited
TPR-like0.5673Inherited
Glutathione synthetase ATP-binding domain-like0.6583Inherited
Growth factor receptor domain0.6848Inherited
Voltage-gated potassium channels0.7124Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.7427Inherited
PDZ domain-like0.8562Inherited
Tropomyosin0.8772Inherited
L domain-like1Inherited


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Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
Helical domain of Sec23/240Direct
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Inositol polyphosphate 5-phosphatase (IPP5)0Direct
Integrin domains0Direct
beta-sandwich domain of Sec23/240Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
POU-specific domain0Direct
Mammalian PLC0Direct
Anticodon-binding domain of Class II aaRS0Direct
Trunk domain of Sec23/240Direct
Proteasome subunits0.0000001679Direct
Actin/HSP700.0000004461Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.0000007967Direct
Clathrin coat assembly domain0.00001384Direct
DNA replication initiator (cdc21/cdc54) N-terminal domain0.00007482Direct
Laminin-type module0.00007482Direct
Spectrin repeat0.00007546Direct
PLC-like (P variant)0.0002258Direct
EF-hand modules in multidomain proteins0.0003987Direct
Calpain large subunit, middle domain (domain III)0.001361Inherited
First domain of FERM0.001911Inherited
Annexin0.002094Inherited
Cdc48 N-terminal domain-like0.002094Inherited
Troponin I0.002094Inherited
Anticodon-binding domain0.002094Inherited
Cdc48 domain 2-like0.002094Inherited
Lamin A/C globular tail domain0.003327Inherited
Third domain of FERM0.006807Inherited
L30e/L7ae ribosomal proteins0.008353Inherited
F1F0 ATP synthase subunit C0.008353Inherited
CCCH zinc finger0.008577Inherited
Calcium ATPase, transduction domain A0.008713Inherited
Translational machinery components0.01179Inherited
Heat shock protein 70kD (HSP70), peptide-binding domain0.01179Inherited
Nitrogenase iron protein-like0.01228Inherited
Laminin G-like module0.01228Inherited
Calponin-homology domain, CH-domain0.01791Inherited
Canonical RBD0.02007Inherited
Myosin rod fragments0.02178Inherited
Cold shock DNA-binding domain-like0.02393Inherited
SH2 domain0.0247Inherited
Motor proteins0.02591Inherited
Second domain of FERM0.02601Inherited
DNA polymerase I0.03902Inherited
BCR-homology GTPase activation domain (BH-domain)0.04457Inherited
Calpain large subunit, catalytic domain (domain II)0.04491Inherited
Fibronectin type III0.05607Inherited
WD40-repeat0.06011Inherited
Pleckstrin-homology domain (PH domain)0.06772Inherited
SH3-domain0.06775Inherited
G proteins0.06908Inherited
Tubulin, C-terminal domain0.07001Inherited
Tubulin, GTPase domain0.08731Inherited
FHA domain0.1049Inherited
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.1093Inherited
Extended AAA-ATPase domain0.1402Inherited
Group II chaperonin (CCT, TRIC), apical domain0.1702Inherited
DBL homology domain (DH-domain)0.2123Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.2123Inherited
LIM domain0.2123Inherited
I set domains0.2352Inherited
Cyclin0.2631Inherited
Synaptotagmin-like (S variant)0.2631Inherited
Protein kinases, catalytic subunit0.2801Inherited
Sec1/munc18-like (SM) proteins0.326Inherited
Elongation factors0.326Inherited
Prefoldin0.4009Inherited
RecA protein-like (ATPase-domain)0.4009Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.4922Inherited
Pumilio repeat0.5749Inherited
Clathrin adaptor core protein0.7363Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.8204Inherited
PDZ domain0.859Inherited
Tropomyosin0.8711Inherited
Growth factor receptor domain0.9277Inherited
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.9277Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor0Direct
Helical domain of Sec23/240Direct
C-terminal, gelsolin-like domain of Sec23/240Direct
Zn-finger domain of Sec23/240Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin alpha N-terminal domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Integrin domains0Direct
Sm-like ribonucleoproteins0.00000001211Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00003224Direct
Spectrin repeat0.00006475Direct
Cysteine-rich domain0.00006627Direct
Translation proteins SH3-like domain0.0001639Direct
Ribosomal proteins S24e, L23 and L15e0.0001792Direct
P-loop containing nucleoside triphosphate hydrolases0.0004853Direct
Class II aaRS ABD-related0.0005417Direct
Calpain large subunit, middle domain (domain III)0.0005417Direct
Metal cation-transporting ATPase, ATP-binding domain N0.0008654Direct
Actin depolymerizing proteins0.0008842Direct
beta-sandwich domain of Sec23/240.001121Inherited
Annexin0.001121Inherited
ADC-like0.001121Inherited
Cdc48 domain 2-like0.001121Inherited
Calcium ATPase, transmembrane domain M0.001343Inherited
CCCH zinc finger0.002172Inherited
Zn-binding ribosomal proteins0.00257Inherited
PLC-like phosphodiesterases0.00261Inherited
Calcium ATPase, transduction domain A0.002681Inherited
S15/NS1 RNA-binding domain0.004559Inherited
F1F0 ATP synthase subunit C0.004559Inherited
PYP-like sensor domain (PAS domain)0.0057Inherited
Nucleic acid-binding proteins0.006118Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.006118Inherited
L30e-like0.01078Inherited
Heat shock protein 70kD (HSP70), peptide-binding domain0.01078Inherited
Myosin rod fragments0.01078Inherited
Translational machinery components0.01134Inherited
Second domain of FERM0.01519Inherited
SH2 domain0.01578Inherited
Calponin-homology domain, CH-domain0.01578Inherited
ACP-like0.02221Inherited
Actin-like ATPase domain0.02533Inherited
Fibronectin type III0.04945Inherited
SH3-domain0.05852Inherited
RNA-binding domain, RBD0.06456Inherited
Tubulin C-terminal domain-like0.06458Inherited
SMAD/FHA domain0.07501Inherited
DNA/RNA polymerases0.0766Inherited
Tubulin nucleotide-binding domain-like0.08133Inherited
Class II aaRS and biotin synthetases0.1022Inherited
PH domain-like0.1263Inherited
Concanavalin A-like lectins/glucanases0.1285Inherited
Ribosomal protein S5 domain 2-like0.1287Inherited
Immunoglobulin0.1556Inherited
DBL homology domain (DH-domain)0.2022Inherited
Cyclin-like0.2022Inherited
EF-hand0.2051Inherited
Protein kinase-like (PK-like)0.2073Inherited
GTPase activation domain, GAP0.2153Inherited
ARM repeat0.2429Inherited
dsRNA-binding domain-like0.253Inherited
Prefoldin0.3147Inherited
Troponin coil-coiled subunits0.3147Inherited
Sec1/munc18-like (SM) proteins0.3147Inherited
EGF/Laminin0.3406Inherited
Activating enzymes of the ubiquitin-like proteins0.3901Inherited
Translation proteins0.4203Inherited
GroEL apical domain-like0.4203Inherited
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain0.4808Inherited
RBP11-like subunits of RNA polymerase0.4808Inherited
GroEL-intermediate domain like0.4853Inherited
GroEL equatorial domain-like0.4853Inherited
HAD-like0.5235Inherited
TPR-like0.5451Inherited
Glutathione synthetase ATP-binding domain-like0.637Inherited
Growth factor receptor domain0.6638Inherited
Voltage-gated potassium channels0.6919Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.7225Inherited
PDZ domain-like0.8393Inherited
Tropomyosin0.8612Inherited
L domain-like1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47473,51695
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    81811,82754
  • 81811 - Helical domain of Sec23/24
  • 82754 - C-terminal, gelsolin-like domain of Sec23/24
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0Direct
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0Direct
    49265,48726
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.00000432Direct
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.0001625Direct
    64593,74853
  • 64593 - Intermediate filament protein, coiled coil region
  • 74853 - Lamin A/C globular tail domain
  • 0.0001625Direct
    54001,49758
  • 54001 - Cysteine proteinases
  • 49758 - Calpain large subunit, middle domain (domain III)
  • 0.0001625Direct
    81660,56784
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 0.0008654Direct
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.001121Inherited
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.001121Inherited
    55550,50044
  • 55550 - SH2 domain
  • 50044 - SH3-domain
  • 0.001121Inherited
    50044,50044
  • 50044 - SH3-domain
  • 50044 - SH3-domain
  • 0.00257Inherited
    47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.00261Inherited
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.004559Inherited
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0057Inherited
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.01078Inherited
    53098,56672
  • 53098 - Ribonuclease H-like
  • 56672 - DNA/RNA polymerases
  • 0.01134Inherited
    54236,47031
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 0.01401Inherited
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0.02221Inherited
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.02221Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.02533Inherited
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.0536Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.08133Inherited
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.08133Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.1287Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.2153Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.2196Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.2196Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.253Inherited
    50978,50978
  • 50978 - WD40 repeat-like
  • 50978 - WD40 repeat-like
  • 0.253Inherited
    52540,50447
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 0.3147Inherited
    48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.3147Inherited
    48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.3612Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.3901Inherited
    50447,50465
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.4808Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.4853Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.4853Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    50729,47473,51695
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 51695 - PLC-like phosphodiesterases
  • 0Direct
    48726,49265,48726
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 48726 - Immunoglobulin
  • 0Direct
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00000009978Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.00002094Direct
    81660,56784,81665
  • 81660 - Metal cation-transporting ATPase, ATP-binding domain N
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.002681Inherited
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0057Inherited
    54236,47031,50729
  • 54236 - Ubiquitin-like
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.008941Inherited
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.01078Inherited
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.253Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.376Inherited
    52540,50447,50465
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 50447 - Translation proteins
  • 50465 - EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
  • 0.4808Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.4853Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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