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Worm Phenotype (WP): innate immune response variant

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Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   Variant [WBPhenotype:0000886] <2>
+ + + + + + 6:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + + + 5:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|56)
+ + + + 4:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|55)
+ + + 3:   organism environmental stimulus response variant [WBPhenotype:0000738] <15>(138|128) (139|57|18)
+ + 2:   organism stress response variant [WBPhenotype:0000067] <20>(75|63) (76|26|7)
+ 1:   organism pathogen response variant [WBPhenotype:0001012] <10>(22|20) (23|10|3)
0:   innate immune response variant [WBPhenotype:0002164] <2>(8|9) (9|3|1)
- 1:   pathogen induced antimicrobial gene expression variant [WBPhenotype:0001800] <2>(8|9) (9|3|1)
- 1:   pathogen infection clearance variant [WBPhenotype:0002505] <2>(0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Histone-fold0Direct
RNA-binding domain, RBD0.00009232Direct
GroEL-intermediate domain like0.0001269Direct
GroEL equatorial domain-like0.0001269Direct
GroEL apical domain-like0.0002038Direct
WD40 repeat-like0.008792Inherited
Cysteine-rich domain0.0334Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.2915Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleosome core histones0Direct
Canonical RBD0.00007716Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0001261Direct
Group II chaperonin (CCT, TRIC), apical domain0.0002176Direct
Armadillo repeat0.0007584Direct
Proteasome subunits0.001422Inherited
Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)0.002279Inherited
WD40-repeat0.007244Inherited
PLC-like (P variant)0.4364Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Histone-fold0Direct
RNA-binding domain, RBD0.00007563Direct
GroEL equatorial domain-like0.000104Direct
GroEL-intermediate domain like0.000104Direct
GroEL apical domain-like0.0001674Direct
Tubulin C-terminal domain-like0.001507Inherited
WD40 repeat-like0.007542Inherited
Cysteine-rich domain0.02938Inherited
C2 domain (Calcium/lipid-binding domain, CaLB)0.2727Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57889,57889
  • 57889 - Cysteine-rich domain
  • 57889 - Cysteine-rich domain
  • 0.000002827Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000104Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000104Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000104Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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