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Worm Phenotype (WP): cell number variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Variant [WBPhenotype:0000886] <4>
+ + 2:   development variant [WBPhenotype:0000518] <7>(506|577) (506|246|68)
+ 1:   organism development variant [WBPhenotype:0000531] <10>(504|576) (504|246|68)
0:   cell number variant [WBPhenotype:0002173] <2>(23|24) (24|6|1)
- 1:   cell number increased [WBPhenotype:0002175] <17>(18|20) (18|6|1)
- 1:   cell number decreased [WBPhenotype:0002174] <14>(7|9) (7|1|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
ArfGap/RecO-like zinc finger0Direct
RNA-binding domain, RBD0.00000000000001687Direct
Sm-like ribonucleoproteins0.000000000001325Direct
CCCH zinc finger0.0000002182Direct
Homeodomain-like0.0000003136Direct
Sec7 domain0.00000042Direct
beta-beta-alpha zinc fingers0.0000006538Direct
ARM repeat0.000001557Direct
KA1-like0.000002353Direct
EGF/Laminin0.000002927Direct
Frizzled cysteine-rich domain0.00004445Direct
Retrovirus zinc finger-like domains0.00005581Direct
Cyclin-like0.0003264Direct
WD40 repeat-like0.0004315Direct
"Winged helix" DNA-binding domain0.0005623Direct
Bromodomain0.0007168Direct
SET domain0.001583Inherited
Protein kinase-like (PK-like)0.007177Inherited
Acyl-CoA N-acyltransferases (Nat)0.02665Inherited
Ubiquitin-like0.03607Inherited
PH domain-like0.05128Inherited
BPTI-like0.1018Inherited
PDZ domain-like0.1982Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Mo25 protein0Direct
Pyk2-associated protein beta ARF-GAP domain0Direct
Canonical RBD0.00000000000003345Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00000000005836Direct
Sec7 domain0.0000007547Direct
CCCH zinc finger0.0000008495Direct
Paired domain0.000006344Direct
Homeodomain0.000007793Direct
Cyclin0.00003354Direct
Frizzled cysteine-rich domain0.00006726Direct
DEP domain0.00006726Direct
Growth factor receptor domain0.000114Direct
Retrovirus zinc finger-like domains0.000114Direct
N-acetyl transferase, NAT0.0002523Direct
Histone lysine methyltransferases0.0003579Direct
Armadillo repeat0.0003858Direct
WD40-repeat0.0006121Direct
Bromodomain0.001236Inherited
Pumilio repeat0.002043Inherited
Classic zinc finger, C2H20.002437Inherited
Protein kinases, catalytic subunit0.01345Inherited
G proteins0.05728Inherited
Small Kunitz-type inhibitors & BPTI-like toxins0.08601Inherited
PDZ domain0.1132Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
ArfGap/RecO-like zinc finger0Direct
RNA-binding domain, RBD0.00000000000001332Direct
Sm-like ribonucleoproteins0.000000000001051Direct
CCCH zinc finger0.0000001766Direct
Homeodomain-like0.000000254Direct
Sec7 domain0.0000003403Direct
beta-beta-alpha zinc fingers0.0000005313Direct
ARM repeat0.00000127Direct
KA1-like0.000001921Direct
EGF/Laminin0.000002391Direct
Frizzled cysteine-rich domain0.0000366Direct
Retrovirus zinc finger-like domains0.00004599Direct
Cyclin-like0.0002707Direct
WD40 repeat-like0.0003583Direct
"Winged helix" DNA-binding domain0.0004682Direct
Bromodomain0.0005989Direct
P-loop containing nucleoside triphosphate hydrolases0.0009509Direct
SET domain0.001332Inherited
Protein kinase-like (PK-like)0.006146Inherited
Acyl-CoA N-acyltransferases (Nat)0.02333Inherited
Ubiquitin-like0.03182Inherited
PH domain-like0.0455Inherited
BPTI-like0.09195Inherited
PDZ domain-like0.1825Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57863,48403
  • 57863 - ArfGap/RecO-like zinc finger
  • 48403 - Ankyrin repeat
  • 0Direct
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.000001143Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.00002895Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.00004223Direct
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.0001034Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.0004927Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57667,57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.000002666Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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