SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): cell number increased

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + 3:   development variant [WBPhenotype:0000518] <6>(508|585) (508|248|68)
+ + 2:   organism development variant [WBPhenotype:0000531] <10>(505|583) (505|248|68)
+ 1:   cell number variant [WBPhenotype:0002173] <2>(24|25) (24|6|1)
0:   cell number increased [WBPhenotype:0002175] <17>(17|21) (18|6|1)
- 1:   excess pronucleus early emb [WBPhenotype:0001164] <2>(1|1) (1|1|0)
- 1:   extra and ectopic cell [WBPhenotype:0001303] <2>(1|0) (1|0|0)
- 1:   excess pharyngeal cells [WBPhenotype:0001635] <1>(2|2) (2|1|0)
- 1:   extra neuron [WBPhenotype:0002508] <1>(0|1) (0|0|0)
- 1:   anterior pharynx extra cells [WBPhenotype:0000151](0|0) (0|0|0)
- 1:   excess coelomocytes [WBPhenotype:0001913](0|0) (0|0|0)
- 1:   excess hypodermal cells [WBPhenotype:0001643](1|1) (1|1|0)
- 1:   excess intestinal cells [WBPhenotype:0001636](2|3) (2|0|0)
- 1:   excess seam cells [WBPhenotype:0001887](2|4) (3|0|0)
- 1:   extra distal tip cells [WBPhenotype:0001927](2|2) (2|0|0)
- 1:   extra excretory cells [WBPhenotype:0002181](5|6) (5|1|0)
- 1:   extra gonadal sheath cells [WBPhenotype:0001992](0|0) (0|0|0)
- 1:   extra linker cells [WBPhenotype:0002189](0|0) (0|0|0)
- 1:   extra sex myoblasts [WBPhenotype:0002192](0|0) (0|0|0)
- 1:   multiple anchor cells [WBPhenotype:0001586](4|4) (4|1|1)
- 1:   muscle excess [WBPhenotype:0000715](0|0) (0|0|0)
- 1:   tumorous germline [WBPhenotype:0001038](1|1) (1|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
ArfGap/RecO-like zinc finger0Direct
Sm-like ribonucleoproteins0.00000000000008558Direct
beta-beta-alpha zinc fingers0.000000003306Direct
CCCH zinc finger0.00000002495Direct
Sec7 domain0.0000001335Direct
EGF/Laminin0.0000001852Direct
KA1-like0.0000007565Direct
Frizzled cysteine-rich domain0.00001808Direct
Bromodomain0.0002525Direct
RNA-binding domain, RBD0.001248Inherited
Acyl-CoA N-acyltransferases (Nat)0.01079Inherited
BPTI-like0.05369Inherited
PDZ domain-like0.1018Inherited
PH domain-like0.4827Inherited
Cyclin-like0.7242Inherited
Protein kinase-like (PK-like)0.9074Inherited
Homeodomain-like1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Pyk2-associated protein beta ARF-GAP domain0Direct
Mo25 protein0Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000000000006013Direct
CCCH zinc finger0.0000001019Direct
Sec7 domain0.0000002413Direct
DEP domain0.00002749Direct
Frizzled cysteine-rich domain0.00002749Direct
N-acetyl transferase, NAT0.00007226Direct
Classic zinc finger, C2H20.0000939Direct
Armadillo repeat0.0001338Direct
Bromodomain0.0004414Direct
Pumilio repeat0.0008827Direct
Canonical RBD0.001242Inherited
Pleckstrin-homology domain (PH domain)0.005085Inherited
Small Kunitz-type inhibitors & BPTI-like toxins0.04442Inherited
PDZ domain0.05989Inherited
G proteins0.6314Inherited
Cyclin0.6984Inherited
Protein kinases, catalytic subunit0.9131Inherited
WD40-repeat0.9827Inherited
Homeodomain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
ArfGap/RecO-like zinc finger0Direct
Sm-like ribonucleoproteins0.00000000000006719Direct
beta-beta-alpha zinc fingers0.000000002631Direct
CCCH zinc finger0.00000001993Direct
Sec7 domain0.0000001071Direct
EGF/Laminin0.0000001487Direct
KA1-like0.0000006106Direct
Frizzled cysteine-rich domain0.00001475Direct
Bromodomain0.0002077Direct
RNA-binding domain, RBD0.001041Inherited
Ubiquitin-like0.002623Inherited
Acyl-CoA N-acyltransferases (Nat)0.009291Inherited
BPTI-like0.04768Inherited
PDZ domain-like0.09201Inherited
PH domain-like0.4611Inherited
Cyclin-like0.7039Inherited
Protein kinase-like (PK-like)0.8921Inherited
Homeodomain-like1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57863,48403
  • 57863 - ArfGap/RecO-like zinc finger
  • 48403 - Ankyrin repeat
  • 0Direct
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.00000001181Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.000007948Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.000008179Direct
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.0000285Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.3741Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57667,57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.0000005644Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)