SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Worm Phenotype (WP): roaming variant

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Variant [WBPhenotype:0000886] <4>
+ + + 3:   behavior variant [WBPhenotype:0000517] <2>(133|132) (134|53|20)
+ + 2:   locomotion variant [WBPhenotype:0000643] <9>(74|80) (74|32|15)
+ + 2:   movement variant [WBPhenotype:0001206] <9>(65|65) (65|25|9)
+ + 2:   organism behavior variant [WBPhenotype:0000525] <21>(133|132) (134|53|20)
+ 1:   activity level variant [WBPhenotype:0000641] <6>(23|26) (24|11|5)
+ 1:   foraging behavior variant [WBPhenotype:0000662] <8>(14|16) (15|5|1)
0:   roaming variant [WBPhenotype:0002315] <2>(8|9) (9|2|0)
- 1:   roaming increased [WBPhenotype:0002319](2|4) (3|1|0)
- 1:   roaming reduced [WBPhenotype:0001639](2|1) (2|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Transducin (alpha subunit), insertion domain0.0000000001823Direct
SMAD MH1 domain0.000001901Direct
Nicotinic receptor ligand binding domain-like0.00002749Direct
Neurotransmitter-gated ion-channel transmembrane pore0.00002749Direct
SMAD/FHA domain0.00004539Direct
P-loop containing nucleoside triphosphate hydrolases0.0009207Direct
SNF-like0.008919Inherited
Homeodomain-like0.0195Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Transducin (alpha subunit), insertion domain0.0000000004105Direct
G proteins0.000001334Direct
SMAD MH1 domain0.000004295Direct
SMAD domain0.0000189Direct
Neurotransmitter-gated ion-channel transmembrane pore0.00004686Direct
Nicotinic receptor ligand binding domain-like0.00004686Direct
Homeodomain0.0095Inherited
SNF-like0.01025Inherited
Pyridoxal-dependent decarboxylase0.02289Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Transducin (alpha subunit), insertion domain0.0000000001454Direct
SMAD MH1 domain0.000001551Direct
Neurotransmitter-gated ion-channel transmembrane pore0.00002258Direct
Nicotinic receptor ligand binding domain-like0.00002258Direct
SMAD/FHA domain0.00003738Direct
P-loop containing nucleoside triphosphate hydrolases0.0007711Direct
SNF-like0.007665Inherited
Homeodomain-like0.01696Inherited
PLP-dependent transferases0.0193Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0000000001454Direct
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.00002258Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)