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Worm Phenotype (WP): response to bacteria variant

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: WP Hierarchy (worm phenotype from Wormbase Release WS226)

Shortest distance to current term (+ for parents, - for children) WP term [WP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Variant [WBPhenotype:0000886] <2>
+ + + + 4:   physiology variant [WBPhenotype:0000519] <14>(510|587) (510|248|68)
+ + + 3:   organism physiology variant [WBPhenotype:0000576] <9>(369|431) (372|193|56)
+ + 2:   organism homeostasis metabolism variant [WBPhenotype:0000577] <16>(361|421) (363|190|55)
+ 1:   organism environmental stimulus response variant [WBPhenotype:0000738] <15>(138|128) (139|57|18)
0:   response to bacteria variant [WBPhenotype:0002545] <6>(28|22) (28|12|4)
- 1:   bacterial load in gut variant [WBPhenotype:0002546] <1>(0|0) (0|0|0)
- 1:   sickened by nonpathogenic bacteria [WBPhenotype:0002356] <1>(0|0) (0|0|0)
- 1:   avoids bacterial lawn [WBPhenotype:0000402](24|19) (24|11|4)
- 1:   bacterially unswollen [WBPhenotype:0001413](4|2) (4|1|0)
- 1:   conditional attraction to bacterial lawn [WBPhenotype:0002373](0|0) (0|0|0)
- 1:   increased susceptibility to bacterial pathogens [WBPhenotype:0002355](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000001103Direct
Zn-binding ribosomal proteins0.00000008131Direct
Sm-like ribonucleoproteins0.0000002385Direct
S15/NS1 RNA-binding domain0.0000003065Direct
DBL homology domain (DH-domain)0.0000003417Direct
Histone-fold0.000000352Direct
Translation proteins SH3-like domain0.000001452Direct
Class II aaRS and biotin synthetases0.000006366Direct
GroEL-intermediate domain like0.00005736Direct
GroEL equatorial domain-like0.00005736Direct
GroEL apical domain-like0.00005736Direct
Nucleotidylyl transferase0.0001034Direct
Class II aaRS ABD-related0.0003088Direct
Thiamin diphosphate-binding fold (THDP-binding)0.0006872Direct
Multidrug resistance efflux transporter EmrE0.0007457Direct
F1F0 ATP synthase subunit C0.00177Inherited
Actin-like ATPase domain0.003447Inherited
L30e-like0.007002Inherited
Nucleic acid-binding proteins0.01492Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.01685Inherited
Lipovitellin-phosvitin complex, superhelical domain0.0169Inherited
Lipovitellin-phosvitin complex; beta-sheet shell regions0.0169Inherited
Tubulin nucleotide-binding domain-like0.0428Inherited
Heat shock protein 70kD (HSP70), C-terminal subdomain0.0537Inherited
Heat shock protein 70kD (HSP70), peptide-binding domain0.0537Inherited
Tubulin C-terminal domain-like0.06122Inherited
PH domain-like0.1441Inherited
Cysteine-rich domain0.3683Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
a tRNA synthase domain0Direct
Anticodon-binding domain of Class II aaRS0Direct
Proteasome subunits0.000000001091Direct
Nucleosome core histones0.00000002383Direct
DBL homology domain (DH-domain)0.0000003568Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.000006458Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000008173Direct
Anticodon-binding domain0.00001229Direct
Extended AAA-ATPase domain0.00002728Direct
Group II chaperonin (CCT, TRIC), apical domain0.0002721Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0002721Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.000384Direct
L30e/L7ae ribosomal proteins0.001557Inherited
Group II chaperonin (CCT, TRIC), intermediate domain0.001557Inherited
F1F0 ATP synthase subunit C0.001557Inherited
Actin/HSP700.002412Inherited
Lipovitellin-phosvitin complex, superhelical domain0.01559Inherited
Lipovitellin-phosvitin complex; beta-sheet shell regions0.01559Inherited
RecA protein-like (ATPase-domain)0.01559Inherited
Heat shock protein 70kD (HSP70), peptide-binding domain0.03034Inherited
Tubulin, GTPase domain0.04096Inherited
Pleckstrin-homology domain (PH domain)0.04496Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000000008796Direct
Zn-binding ribosomal proteins0.00000006513Direct
Sm-like ribonucleoproteins0.0000001917Direct
S15/NS1 RNA-binding domain0.0000002465Direct
DBL homology domain (DH-domain)0.0000002749Direct
Histone-fold0.0000002833Direct
Translation proteins SH3-like domain0.000001175Direct
Class II aaRS and biotin synthetases0.000005175Direct
GroEL equatorial domain-like0.00004692Direct
GroEL apical domain-like0.00004692Direct
GroEL-intermediate domain like0.00004692Direct
Nucleotidylyl transferase0.00008472Direct
Class II aaRS ABD-related0.0002543Direct
Thiamin diphosphate-binding fold (THDP-binding)0.00057Direct
Multidrug resistance efflux transporter EmrE0.0006195Direct
F1F0 ATP synthase subunit C0.001481Inherited
Actin-like ATPase domain0.002916Inherited
L30e-like0.005974Inherited
Nucleic acid-binding proteins0.01292Inherited
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.01463Inherited
Lipovitellin-phosvitin complex; beta-sheet shell regions0.01468Inherited
Lipovitellin-phosvitin complex, superhelical domain0.01468Inherited
Tubulin nucleotide-binding domain-like0.03779Inherited
Heat shock protein 70kD (HSP70), C-terminal subdomain0.04768Inherited
Heat shock protein 70kD (HSP70), peptide-binding domain0.04768Inherited
Tubulin C-terminal domain-like0.05452Inherited
PH domain-like0.1314Inherited
Cysteine-rich domain0.348Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48065,50729
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0.000001593Direct
    50249,55681
  • 50249 - Nucleic acid-binding proteins
  • 55681 - Class II aaRS and biotin synthetases
  • 0.00002833Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.00004692Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00004692Direct
    81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0.001481Inherited
    55681,52954
  • 55681 - Class II aaRS and biotin synthetases
  • 52954 - Class II aaRS ABD-related
  • 0.001481Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.001825Inherited
    56968,48431
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 0.01468Inherited
    48431,56968
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0.01468Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.03779Inherited
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.04768Inherited
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.04768Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.00004692Direct
    56968,48431,56968
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 48431 - Lipovitellin-phosvitin complex, superhelical domain
  • 56968 - Lipovitellin-phosvitin complex; beta-sheet shell regions
  • 0.01468Inherited
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.04768Inherited
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.04768Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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