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Xenopus ANatomical entity (XAN): hindbrain

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   anatomical group [XAO:0003001] <2>(418|530) (420|307|132)
+ + + + 4:   anatomical system [XAO:0003002] <19>(285|379) (290|203|91)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   anatomical region [XAO:0003186] <51>(373|484) (374|284|122)
+ + + 3:   whole organism [XAO:0003004] <12>(463|595) (466|331|144)
+ + + 3:   organism subdivision [XAO:0003013] <11>(378|498) (381|291|125)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   nervous system [XAO:0000177] <11>(134|200) (140|112|51)
+ + + 3:   head region [XAO:0000040] <4>(179|247) (182|139|57)
+ + + 3:   compound organ [XAO:0003041] <8>(335|444) (336|275|123)
+ + 2:   central nervous system [XAO:0000215] <7>(129|190) (132|107|47)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|321|141)
+ + 2:   head [XAO:0003024] <22>(179|246) (182|139|57)
+ + 2:   cavitated compound organ [XAO:0003165] <21>(287|393) (290|247|112)
+ 1:   multi-tissue structure [XAO:0003037] <131>(48|62) (51|30|14)
+ 1:   brain [XAO:0000010] <14>(78|120) (78|64|28)
0:   hindbrain [XAO:0000015] <7>(9|11) (9|2|1)
- 1:   rhombomere [XAO:0004079] <8>(1|1) (1|0|0)
- 1:   medulla oblongata [XAO:0003100] <6>(1|1) (1|0|0)
- 1:   cerebellum [XAO:0003098] <1>(0|0) (0|0|0)
- 1:   Mauthner cell [XAO:0005035](0|0) (0|0|0)
- 1:   fourth ventricle [XAO:0003099](0|0) (0|0|0)
- 1:   locus coeruleus [XAO:0004566](0|0) (0|0|0)
- 1:   rhombic lip [XAO:0004135](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Hedgehog/DD-peptidase0Direct
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.00000004695Direct
HMG-box0.0000003675Direct
Glucocorticoid receptor-like (DNA-binding domain)0.000003828Direct
RNA-binding domain, RBD0.0000854Direct
Frizzled cysteine-rich domain0.000147Direct
BRK domain-like0.000482Direct
Intermediate filament protein, coiled coil region0.09922Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
HLH, helix-loop-helix DNA-binding domain0.000000152Direct
HMG-box0.0000007344Direct
Tandem AAA-ATPase domain0.00002652Direct
Frizzled cysteine-rich domain0.000193Direct
Canonical RBD0.0002564Direct
BRK domain-like0.0004884Direct
Classic zinc finger, C2H20.0005867Direct
Histone lysine methyltransferases0.0006567Direct
Intermediate filament protein, coiled coil region0.1111Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Hedgehog/DD-peptidase0Direct
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.00000003313Direct
HMG-box0.000000261Direct
Glucocorticoid receptor-like (DNA-binding domain)0.00000275Direct
RNA-binding domain, RBD0.00006303Direct
Frizzled cysteine-rich domain0.0001092Direct
BRK domain-like0.0003636Direct
Intermediate filament protein, coiled coil region0.08402Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.00008768Direct
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.0007784Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.000792Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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