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Xenopus ANatomical entity (XAN): pre-chordal neural plate

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   embryo [XAO:0000113] <8>(133|185) (135|87|37)
+ + + + 4:   primary germ layer [XAO:0003011] <4>(107|153) (108|71|29)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   whole organism [XAO:0003004] <12>(463|595) (466|331|144)
+ + + 3:   ectoderm [XAO:0000001] <15>(61|84) (61|42|11)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   neuroectoderm [XAO:0000042] <9>(25|29) (26|14|5)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|321|141)
+ 1:   tissue [XAO:0003040] <186>(180|249) (187|128|57)
+ 1:   neural plate [XAO:0000249] <10>(18|18) (18|7|3)
0:   pre-chordal neural plate [XAO:0000045] <3>(10|11) (10|3|2)
- 1:   anterior neural fold [XAO:0000310](5|9) (5|2|2)
- 1:   optic field [XAO:0004090](6|5) (6|1|0)
- 1:   pre-chordal neural plate border [XAO:0004102](4|4) (4|1|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.00000000001699Direct
Frizzled cysteine-rich domain0.00000000002253Direct
Snake toxin-like0.000001529Direct
HMG-box0.000002185Direct
"Winged helix" DNA-binding domain0.000007526Direct
beta-beta-alpha zinc fingers0.00006049Direct
TIMP-like0.00008264Direct
Orange domain-like0.0001123Direct
Growth factor receptor domain0.01089Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Noggin0Direct
Homeodomain0Direct
Extracellular domain of cell surface receptors0Direct
Frizzled cysteine-rich domain0.00000000005055Direct
HLH, helix-loop-helix DNA-binding domain0.00000000006923Direct
Forkhead DNA-binding domain0.00000004031Direct
Paired domain0.000001298Direct
HMG-box0.000003833Direct
Classic zinc finger, C2H20.00001401Direct
Hairy Orange domain0.0001257Direct
POU-specific domain0.0005715Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.00000000001187Direct
Frizzled cysteine-rich domain0.00000000001575Direct
Snake toxin-like0.000001093Direct
HMG-box0.000001565Direct
"Winged helix" DNA-binding domain0.000005429Direct
beta-beta-alpha zinc fingers0.0000445Direct
TIMP-like0.00006098Direct
Orange domain-like0.0000831Direct
Growth factor receptor domain0.008563Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.000001276Direct
    63501,50242
  • 63501 - Frizzled cysteine-rich domain
  • 50242 - TIMP-like
  • 0.00000271Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.0000831Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.0006577Direct
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.008313Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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