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Xenopus ANatomical entity (XAN): chordal neural plate

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   embryo [XAO:0000113] <8>(133|185) (135|87|37)
+ + + + 4:   primary germ layer [XAO:0003011] <4>(107|153) (108|71|29)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   ectoderm [XAO:0000001] <15>(61|84) (61|42|11)
+ + + 3:   whole organism [XAO:0003004] <12>(463|595) (466|331|144)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   neuroectoderm [XAO:0000042] <9>(25|29) (26|14|5)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|321|141)
+ 1:   tissue [XAO:0003040] <186>(180|249) (187|128|57)
+ 1:   neural plate [XAO:0000249] <10>(18|18) (18|7|3)
0:   chordal neural plate [XAO:0000046] <2>(6|6) (6|3|0)
- 1:   chordal neural plate border [XAO:0004103](3|3) (3|1|0)
- 1:   posterior neural fold [XAO:0005242](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.00000000001112Direct
lambda repressor-like DNA-binding domains0.000007334Direct
Snake toxin-like0.0000153Direct
beta-beta-alpha zinc fingers0.0002368Direct
HMG-box0.000918Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0Direct
HLH, helix-loop-helix DNA-binding domain0.0000000000478Direct
Extracellular domain of cell surface receptors0.000007873Direct
POU-specific domain0.00002471Direct
Classic zinc finger, C2H20.00002648Direct
Cell cycle control phosphatase, catalytic domain0.0001265Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.000000000007766Direct
lambda repressor-like DNA-binding domains0.000005289Direct
Snake toxin-like0.00001111Direct
beta-beta-alpha zinc fingers0.0001771Direct
HMG-box0.0006973Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.000001185Direct
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.00001792Direct
    57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.0002758Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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