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Xenopus ANatomical entity (XAN): neural crest

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   embryo [XAO:0000113] <8>(133|185) (135|87|37)
+ + + 3:   whole organism [XAO:0003004] <12>(463|595) (466|331|144)
+ + + 3:   primary germ layer [XAO:0003011] <4>(107|153) (108|71|29)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|321|141)
+ + 2:   ectoderm [XAO:0000001] <15>(61|84) (61|42|11)
+ 1:   neuroectoderm [XAO:0000042] <9>(25|29) (26|14|5)
+ 1:   tissue [XAO:0003040] <186>(180|249) (187|128|57)
0:   neural crest [XAO:0000048] <8>(10|14) (11|5|2)
- 1:   cranial neural crest [XAO:0001001] <3>(7|11) (7|4|1)
- 1:   migratory neural crest cell [XAO:0004069] <1>(0|1) (0|1|0)
- 1:   trunk neural crest [XAO:0000319] <1>(0|1) (0|0|0)
- 1:   cardiac neural crest [XAO:0004190](1|1) (1|0|0)
- 1:   postmigratory neural crest cell [XAO:0004309](1|1) (1|1|0)
- 1:   premigratory neural crest cell [XAO:0004522](0|0) (0|0|0)
- 1:   sacral neural crest [XAO:0004192](0|0) (0|0|0)
- 1:   vagal neural crest [XAO:0004191](1|1) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
PriA/YqbF domain0Direct
Homeodomain-like0.000000000004917Direct
Sema domain0.0000001194Direct
Plexin repeat0.0000004222Direct
Cytokine0.00001816Direct
"Winged helix" DNA-binding domain0.00002325Direct
GINS helical bundle-like0.0005721Direct
HMG-box0.0007147Direct
HLH, helix-loop-helix DNA-binding domain0.0007817Direct
Cyclin-like0.04456Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0.0000000001538Direct
Sema domain0.00000003Direct
Plexin repeat0.0000008131Direct
Fibroblast growth factors (FGF)0.00001037Direct
Forkhead DNA-binding domain0.00003058Direct
Paired domain0.0001536Direct
HMG-box0.0009989Direct
HLH, helix-loop-helix DNA-binding domain0.001358Inherited
Glutathione peroxidase-like0.00176Inherited
Arginine methyltransferase0.00185Inherited
ets domain0.00453Inherited
P4 origin-binding domain-like0.006177Inherited
Ephrin receptor ligand binding domain0.006946Inherited
Cyclin0.01571Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PriA/YqbF domain0Direct
Homeodomain-like0.00000000000343Direct
Sema domain0.00000008448Direct
Plexin repeat0.0000003Direct
Cytokine0.0000132Direct
"Winged helix" DNA-binding domain0.00001694Direct
GINS helical bundle-like0.0004323Direct
HMG-box0.0005409Direct
HLH, helix-loop-helix DNA-binding domain0.0005927Direct
RNA-binding domain, RBD0.0009809Direct
Cyclin-like0.03646Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.00000008448Direct
    103575,48726
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.0002419Direct
    81383,52047
  • 81383 - F-box domain
  • 52047 - RNI-like
  • 0.001236Inherited
    56112,47769
  • 56112 - Protein kinase-like (PK-like)
  • 47769 - SAM/Pointed domain
  • 0.002842Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.01166Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    101912,103575,48726
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.0002419Direct
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.0009438Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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