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Xenopus ANatomical entity (XAN): mesoderm

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + + 4:   whole organism [XAO:0003004] <12>(463|595) (466|331|144)
+ + + 3:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|321|141)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + 2:   embryo [XAO:0000113] <8>(133|185) (135|87|37)
+ + 2:   tissue [XAO:0003040] <186>(180|249) (187|128|57)
+ 1:   primary germ layer [XAO:0003011] <4>(107|153) (108|71|29)
0:   mesoderm [XAO:0000050] <9>(28|38) (28|11|7)
- 1:   lateral plate mesoderm [XAO:0000311] <6>(9|11) (9|3|1)
- 1:   somite [XAO:0000058] <5>(8|10) (10|4|2)
- 1:   mesodermal cell [XAO:0003255] <1>(3|3) (3|0|0)
- 1:   paraxial mesoderm [XAO:0000259] <1>(5|9) (5|3|2)
- 1:   head mesoderm [XAO:0000053](5|6) (5|0|0)
- 1:   intermediate mesoderm [XAO:0000085](4|4) (4|1|0)
- 1:   migrating macrophage [XAO:0005037](0|0) (0|0|0)
- 1:   presumptive paraxial mesoderm [XAO:0004134](1|2) (1|0|0)
- 1:   splanchnic layer of lateral plate mesoderm [XAO:0000276](1|1) (1|1|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Hedgehog/DD-peptidase0Direct
Guanido kinase N-terminal domain0Direct
Homeodomain-like0.000000000002019Direct
HLH, helix-loop-helix DNA-binding domain0.00000000001713Direct
Frizzled cysteine-rich domain0.0000000000701Direct
Cytokine0.0000007647Direct
Cystine-knot cytokines0.000002343Direct
Orange domain-like0.00001505Direct
Troponin coil-coiled subunits0.00007921Direct
p53-like transcription factors0.0003135Direct
Snake toxin-like0.000324Direct
SMAD MH1 domain0.0005775Direct
14-3-3 protein0.002019Inherited
FnI-like domain0.002088Inherited
"Winged helix" DNA-binding domain0.002721Inherited
PYP-like sensor domain (PAS domain)0.003961Inherited
Protein kinase-like (PK-like)0.02058Inherited
SRF-like0.02218Inherited
GroEL-intermediate domain like0.02605Inherited
GroEL equatorial domain-like0.02605Inherited
GroEL apical domain-like0.02605Inherited
Actin-like ATPase domain0.05708Inherited
Globin-like0.06172Inherited
Hemopexin-like domain0.0643Inherited
Tropomyosin0.09282Inherited
beta-beta-alpha zinc fingers0.1914Inherited
Integrin domains0.2511Inherited
Metalloproteases ("zincins"), catalytic domain0.256Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
Noggin0Direct
Guanido kinase catalytic domain0Direct
Pointed domain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
Guanido kinase N-terminal domain0Direct
Troponin I0Direct
Extracellular domain of cell surface receptors0Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
Homeodomain0.000000000008602Direct
HLH, helix-loop-helix DNA-binding domain0.00000000008775Direct
Frizzled cysteine-rich domain0.0000000001573Direct
ets domain0.000000002341Direct
Fibroblast growth factors (FGF)0.000003626Direct
Transforming growth factor (TGF)-beta0.00001304Direct
Hairy Orange domain0.00001882Direct
Growth factor receptor domain0.00003538Direct
L domain0.00008814Direct
Paired domain0.0001809Direct
VWC domain0.0002392Direct
Erythroid transcription factor GATA-10.0005082Direct
T-box0.0005142Direct
SMAD MH1 domain0.0006183Direct
Forkhead DNA-binding domain0.0008079Direct
14-3-3 protein0.002082Inherited
Parvalbumin0.002487Inherited
Actin/HSP700.005127Inherited
Protein kinases, catalytic subunit0.01433Inherited
SRF-like0.02134Inherited
Glutathione peroxidase-like0.02436Inherited
Matrix metalloproteases, catalytic domain0.0296Inherited
Classic zinc finger, C2H20.02961Inherited
Tropomyosin0.05616Inherited
Group II chaperonin (CCT, TRIC), apical domain0.06303Inherited
Globins0.06507Inherited
Group II chaperonin (CCT, TRIC), intermediate domain0.06907Inherited
Hemopexin-like domain0.07229Inherited
Integrin domains0.2668Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Guanido kinase N-terminal domain0Direct
Hedgehog/DD-peptidase0Direct
Homeodomain-like0.000000000001408Direct
HLH, helix-loop-helix DNA-binding domain0.00000000001197Direct
Frizzled cysteine-rich domain0.00000000004904Direct
Cytokine0.0000005443Direct
Cystine-knot cytokines0.000001679Direct
Orange domain-like0.00001092Direct
Troponin coil-coiled subunits0.00005844Direct
p53-like transcription factors0.0002352Direct
Snake toxin-like0.0002431Direct
SMAD MH1 domain0.0004366Direct
14-3-3 protein0.001551Inherited
FnI-like domain0.001603Inherited
"Winged helix" DNA-binding domain0.0021Inherited
PYP-like sensor domain (PAS domain)0.003064Inherited
Protein kinase-like (PK-like)0.01638Inherited
SRF-like0.01768Inherited
GroEL equatorial domain-like0.02087Inherited
GroEL apical domain-like0.02087Inherited
GroEL-intermediate domain like0.02087Inherited
Actin-like ATPase domain0.04705Inherited
Globin-like0.05094Inherited
Hemopexin-like domain0.05322Inherited
Tropomyosin0.07819Inherited
beta-beta-alpha zinc fingers0.1685Inherited
Integrin domains0.2245Inherited
Metalloproteases ("zincins"), catalytic domain0.2292Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    48034,55931
  • 48034 - Guanido kinase N-terminal domain
  • 55931 - Glutamine synthetase/guanido kinase
  • 0Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.00001092Direct
    57184,52058
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.00005844Direct
    52058,57184
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0.00005844Direct
    63501,50242
  • 63501 - Frizzled cysteine-rich domain
  • 50242 - TIMP-like
  • 0.0003664Direct
    50729,56112
  • 50729 - PH domain-like
  • 56112 - Protein kinase-like (PK-like)
  • 0.0003664Direct
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.007159Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.01142Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.02954Inherited
    57184,57184
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.125Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    52058,57184,52058
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.0003664Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.0006604Direct
    57196,57184,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.01768Inherited
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.02087Inherited
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.02163Inherited
    57667,57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.6538Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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