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Xenopus ANatomical entity (XAN): somite

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   embryo [XAO:0000113] <8>(133|185) (135|87|37)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   anatomical group [XAO:0003001] <2>(418|530) (420|307|132)
+ + + 3:   whole organism [XAO:0003004] <12>(463|595) (466|331|144)
+ + 2:   primary germ layer [XAO:0003011] <4>(107|153) (108|71|29)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|321|141)
+ + 2:   musculoskeletal system [XAO:0000168] <2>(43|60) (46|26|15)
+ + 2:   anatomical system [XAO:0003002] <19>(285|379) (290|203|91)
+ 1:   tissue [XAO:0003040] <186>(180|249) (187|128|57)
+ 1:   muscular system [XAO:0004042] <4>(28|41) (31|17|8)
+ 1:   mesoderm [XAO:0000050] <9>(28|38) (28|11|7)
0:   somite [XAO:0000058] <5>(8|10) (10|4|2)
- 1:   sclerotome [XAO:0000397] <21>(0|0) (0|0|0)
- 1:   trunk somite [XAO:0000314] <13>(1|2) (1|0|1)
- 1:   tail somite [XAO:0003143] <5>(0|0) (0|0|1)
- 1:   head somite [XAO:0000313] <4>(1|1) (1|1|0)
- 1:   dermomyotome [XAO:0005080] <2>(3|3) (3|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
HLH, helix-loop-helix DNA-binding domain0.0000001249Direct
Frizzled cysteine-rich domain0.0002488Direct
PYP-like sensor domain (PAS domain)0.0003526Direct
FnI-like domain0.0007957Direct
14-3-3 protein0.0009887Direct
SRF-like0.00142Inherited
Tropomyosin0.005376Inherited
Actin-like ATPase domain0.01393Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
HLH, helix-loop-helix DNA-binding domain0.0000002462Direct
Parvalbumin0.0001885Direct
Frizzled cysteine-rich domain0.0002665Direct
14-3-3 protein0.0009297Direct
L domain0.0009297Direct
SRF-like0.001291Inherited
Actin/HSP700.002285Inherited
Tropomyosin0.002507Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
HLH, helix-loop-helix DNA-binding domain0.0000000884Direct
Frizzled cysteine-rich domain0.0001861Direct
PYP-like sensor domain (PAS domain)0.000265Direct
FnI-like domain0.0006034Direct
14-3-3 protein0.0007513Direct
Cytokine0.0008006Direct
Homeodomain-like0.0008369Direct
SRF-like0.001085Inherited
Tropomyosin0.004186Inherited
Actin-like ATPase domain0.01101Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    57184,52058
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.0007513Direct
    52058,57184
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0.0007513Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.00292Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.002238Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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