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Xenopus ANatomical entity (XAN): muscle

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   whole organism [XAO:0003004] <12>(463|595) (466|331|144)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   anatomical group [XAO:0003001] <2>(418|530) (420|307|132)
+ + 2:   musculoskeletal system [XAO:0000168] <2>(43|60) (46|26|15)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|321|141)
+ + 2:   anatomical system [XAO:0003002] <19>(285|379) (290|203|91)
+ 1:   tissue [XAO:0003040] <186>(180|249) (187|128|57)
+ 1:   muscular system [XAO:0004042] <4>(28|41) (31|17|8)
0:   muscle [XAO:0000172] <10>(20|28) (23|11|4)
- 1:   cranial muscle [XAO:0004322] <12>(3|4) (3|1|0)
- 1:   skeletal muscle [XAO:0000174] <5>(16|18) (19|10|3)
- 1:   myocyte [XAO:0004475] <3>(3|2) (3|1|0)
- 1:   myocardium [XAO:0000065] <1>(2|4) (2|0|0)
- 1:   smooth muscle [XAO:0000175] <1>(0|0) (0|0|0)
- 1:   iliofibularis [XAO:0005069](0|0) (0|0|0)
- 1:   m. rectus abdominis [XAO:0004128](0|0) (0|0|0)
- 1:   musculature of face [XAO:0001013](2|3) (2|1|0)
- 1:   pericardial muscle [XAO:0004183](0|0) (0|0|0)
- 1:   secondary myofiber [XAO:0005077](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
SRF-like0Direct
HSP90 C-terminal domain0Direct
GroEL-intermediate domain like0.000002363Direct
GroEL equatorial domain-like0.000002363Direct
GroEL apical domain-like0.00001891Direct
Translation proteins SH3-like domain0.0001186Direct
Acyl-CoA dehydrogenase C-terminal domain-like0.0005702Direct
Acyl-CoA dehydrogenase NM domain-like0.0005702Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.002192Inherited
Zn-binding ribosomal proteins0.002249Inherited
HSP20-like chaperones0.003034Inherited
Thiolase-like0.003602Inherited
Actin-like ATPase domain0.003614Inherited
Heat shock protein 70kD (HSP70), peptide-binding domain0.004141Inherited
Tropomyosin0.01789Inherited
Myosin rod fragments0.0186Inherited
EF-hand0.07113Inherited
PYP-like sensor domain (PAS domain)0.1331Inherited
HLH, helix-loop-helix DNA-binding domain0.353Inherited
p53-like transcription factors0.9528Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
GABARAP-like0Direct
Malic enzyme N-domain0Direct
HSP90 C-terminal domain0Direct
Hsp90 middle domain0Direct
SRF-like0Direct
Heat shock protein 90, HSP90, N-terminal domain0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Troponin I0Direct
Medium chain acyl-CoA dehydrogenase-like, C-terminal domain0.000004129Direct
Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains0.000004129Direct
Group II chaperonin (CCT, TRIC), apical domain0.00001247Direct
Proteasome subunits0.00001835Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00006026Direct
Actin/HSP700.00007856Direct
Thiolase-related0.0005968Direct
Translational machinery components0.0005968Direct
Canonical RBD0.000976Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.003862Inherited
Tropomyosin0.006272Inherited
Parvalbumin0.006592Inherited
Hypoxia-inducible factor Hif2a, C-terminal domain0.0141Inherited
Myosin rod fragments0.01769Inherited
28-residue LRR0.08307Inherited
Erythroid transcription factor GATA-10.1368Inherited
HLH, helix-loop-helix DNA-binding domain0.377Inherited
T-box0.4777Inherited
Forkhead DNA-binding domain0.7399Inherited
Motor proteins0.7577Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
HSP90 C-terminal domain0Direct
SRF-like0Direct
GroEL equatorial domain-like0.000001694Direct
GroEL-intermediate domain like0.000001694Direct
GroEL apical domain-like0.00001376Direct
Translation proteins SH3-like domain0.00008786Direct
Acyl-CoA dehydrogenase C-terminal domain-like0.0004309Direct
Acyl-CoA dehydrogenase NM domain-like0.0004309Direct
Pentein0.001101Inherited
LDH C-terminal domain-like0.001101Inherited
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.001685Inherited
Zn-binding ribosomal proteins0.001729Inherited
HSP20-like chaperones0.002345Inherited
Thiolase-like0.002782Inherited
Actin-like ATPase domain0.002792Inherited
Heat shock protein 70kD (HSP70), peptide-binding domain0.003207Inherited
Translation proteins0.004559Inherited
Tropomyosin0.01419Inherited
Myosin rod fragments0.01476Inherited
EF-hand0.05913Inherited
PYP-like sensor domain (PAS domain)0.1152Inherited
HLH, helix-loop-helix DNA-binding domain0.3227Inherited
p53-like transcription factors0.9254Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48371,46785
  • 48371 - ARM repeat
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000008688Direct
    56645,47203
  • 56645 - Acyl-CoA dehydrogenase NM domain-like
  • 47203 - Acyl-CoA dehydrogenase C-terminal domain-like
  • 0.0004309Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.0007715Direct
    51735,56327
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 56327 - LDH C-terminal domain-like
  • 0.001101Inherited
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.001729Inherited
    53901,53901
  • 53901 - Thiolase-like
  • 53901 - Thiolase-like
  • 0.002782Inherited
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.003207Inherited
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.005811Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    90257,90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.001729Inherited
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.003207Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)