SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Xenopus ANatomical entity (XAN): peripheral nervous system

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + + 4:   whole organism [XAO:0003004] <12>(463|595) (466|331|144)
+ + + 3:   anatomical group [XAO:0003001] <2>(418|530) (420|307|132)
+ + 2:   anatomical system [XAO:0003002] <19>(285|379) (290|203|91)
+ 1:   nervous system [XAO:0000177] <11>(134|200) (140|112|51)
0:   peripheral nervous system [XAO:0000178] <7>(13|12) (14|4|0)
- 1:   ganglion [XAO:0000209] <7>(6|6) (7|3|0)
- 1:   cephalic nerve [XAO:0005309] <5>(8|8) (9|2|0)
- 1:   lateral line system [XAO:0000095] <4>(1|1) (1|0|0)
- 1:   epibranchial placode [XAO:0000284] <3>(0|0) (0|0|0)
- 1:   Schwann cell [XAO:0005044](0|0) (0|0|0)
- 1:   spinal nerve [XAO:0003101](0|0) (0|0|0)
- 1:   sympathetic chain [XAO:0000211](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Synuclein0Direct
Homeodomain-like0.0000000006381Direct
14-3-3 protein0.0000004043Direct
Intermediate filament protein, coiled coil region0.000002202Direct
HLH, helix-loop-helix DNA-binding domain0.000005372Direct
Second domain of FERM0.0006359Direct
Cytokine0.001033Inherited
Orange domain-like0.004435Inherited
p53-like transcription factors0.004981Inherited
Voltage-gated potassium channels0.0228Inherited
Tubulin C-terminal domain-like0.07827Inherited
Tubulin nucleotide-binding domain-like0.07827Inherited
Galactose-binding domain-like0.1766Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Synuclein0Direct
Homeodomain0.0000000006252Direct
14-3-3 protein0.0000004285Direct
Intermediate filament protein, coiled coil region0.000003234Direct
HLH, helix-loop-helix DNA-binding domain0.000009549Direct
Second domain of FERM0.002464Inherited
Hairy Orange domain0.004313Inherited
Fibroblast growth factors (FGF)0.006013Inherited
Tetramerization domain of potassium channels0.02311Inherited
Tubulin, C-terminal domain0.07802Inherited
Tubulin, GTPase domain0.07802Inherited
Voltage-gated potassium channels0.183Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Synuclein0Direct
Homeodomain-like0.0000000004471Direct
14-3-3 protein0.0000002872Direct
Intermediate filament protein, coiled coil region0.000001577Direct
HLH, helix-loop-helix DNA-binding domain0.000003866Direct
Second domain of FERM0.000481Direct
Cytokine0.0007857Direct
Orange domain-like0.003441Inherited
p53-like transcription factors0.003869Inherited
Frizzled cysteine-rich domain0.01816Inherited
Voltage-gated potassium channels0.01819Inherited
Tubulin C-terminal domain-like0.06539Inherited
Tubulin nucleotide-binding domain-like0.06539Inherited
Galactose-binding domain-like0.1549Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47031,50729
  • 47031 - Second domain of FERM
  • 50729 - PH domain-like
  • 0.0009998Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.001537Inherited
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.003441Inherited
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.06539Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)