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Xenopus ANatomical entity (XAN): eye

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   anatomical group [XAO:0003001] <2>(418|530) (420|307|132)
+ + + + 4:   whole organism [XAO:0003004] <12>(463|595) (466|331|144)
+ + + + 4:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   anatomical region [XAO:0003186] <51>(373|484) (374|284|122)
+ + + 3:   anatomical system [XAO:0003002] <19>(285|379) (290|203|91)
+ + + 3:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|321|141)
+ + 2:   organism subdivision [XAO:0003013] <11>(378|498) (381|291|125)
+ + 2:   head region [XAO:0000040] <4>(179|247) (182|139|57)
+ + 2:   sensory system [XAO:0003194] <5>(38|52) (44|25|10)
+ + 2:   compound organ [XAO:0003041] <8>(335|444) (336|275|123)
+ + 2:   nervous system [XAO:0000177] <11>(134|200) (140|112|51)
+ 1:   cavitated compound organ [XAO:0003165] <21>(287|393) (290|247|112)
+ 1:   visual system [XAO:0003198] <5>(26|35) (29|15|7)
+ 1:   central nervous system [XAO:0000215] <7>(129|190) (132|107|47)
+ 1:   head [XAO:0003024] <22>(179|246) (182|139|57)
0:   eye [XAO:0000179] <14>(24|29) (26|13|6)
- 1:   retina [XAO:0000009] <6>(10|15) (12|8|2)
- 1:   lens [XAO:0000008] <3>(2|2) (2|0|0)
- 1:   choroid [XAO:0004460](0|0) (0|0|0)
- 1:   choroid fissure [XAO:0000474](0|0) (0|0|0)
- 1:   ciliary body [XAO:0000186](0|0) (0|0|0)
- 1:   conjunctiva [XAO:0000182](0|0) (0|0|0)
- 1:   cornea [XAO:0000180](0|0) (0|0|0)
- 1:   globe [XAO:0000181](0|0) (0|0|0)
- 1:   iris [XAO:0000185](0|0) (0|0|0)
- 1:   lower eyelid [XAO:0000007](0|0) (0|0|0)
- 1:   optic disc [XAO:0005066](2|2) (2|0|0)
- 1:   optic nerve [XAO:0000188](3|3) (3|0|0)
- 1:   pupil [XAO:0000283](0|0) (0|0|0)
- 1:   sclera [XAO:0000183](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Nop domain0Direct
Hedgehog/DD-peptidase0Direct
GINS helical bundle-like0Direct
PriA/YqbF domain0Direct
Synuclein0Direct
Guanido kinase N-terminal domain0Direct
Homeodomain-like0.000000000000002298Direct
HLH, helix-loop-helix DNA-binding domain0.00000000000009161Direct
Cytokine0.0000000015Direct
"Winged helix" DNA-binding domain0.0000003022Direct
Frizzled cysteine-rich domain0.000006651Direct
RNA-binding domain, RBD0.00002239Direct
PYP-like sensor domain (PAS domain)0.0001289Direct
Orange domain-like0.0001469Direct
SMAD MH1 domain0.0001845Direct
Zn-binding ribosomal proteins0.0007709Direct
gamma-Crystallin-like0.01854Inherited
Intermediate filament protein, coiled coil region0.04666Inherited
Ras GEF0.1701Inherited
Fibronectin type III0.287Inherited
Galactose-binding domain-like0.4934Inherited
Voltage-gated potassium channels0.5178Inherited
POZ domain1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Synuclein0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
Guanido kinase catalytic domain0Direct
Nop domain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
Guanido kinase N-terminal domain0Direct
Arrestin/Vps26-like0Direct
PAS domain of steroid receptor coactivator 1A, NCo-A10Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
HLH, helix-loop-helix DNA-binding domain0.0000000000004436Direct
Homeodomain0.000000000002073Direct
Fibroblast growth factors (FGF)0.000000009152Direct
Forkhead DNA-binding domain0.000004255Direct
Frizzled cysteine-rich domain0.000009135Direct
SMAD domain0.00004664Direct
Hairy Orange domain0.0001552Direct
SMAD MH1 domain0.0001903Direct
Canonical RBD0.0003051Direct
Sema domain0.0009222Direct
I set domains0.002771Inherited
Crystallins/Ca-binding development proteins0.01902Inherited
POU-specific domain0.03437Inherited
Intermediate filament protein, coiled coil region0.05399Inherited
Fibronectin type III0.3309Inherited
Higher-molecular-weight phosphotyrosine protein phosphatases0.3804Inherited
Tetramerization domain of potassium channels0.4835Inherited
Voltage-gated potassium channels0.756Inherited
Rhodopsin-like1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Guanido kinase N-terminal domain0Direct
PriA/YqbF domain0Direct
Synuclein0Direct
GINS helical bundle-like0Direct
Hedgehog/DD-peptidase0Direct
Nop domain0Direct
14-3-3 protein0Direct
Homeodomain-like0.000000000000001596Direct
HLH, helix-loop-helix DNA-binding domain0.00000000000006375Direct
Cytokine0.000000001052Direct
"Winged helix" DNA-binding domain0.0000002144Direct
Frizzled cysteine-rich domain0.000004795Direct
RNA-binding domain, RBD0.00001631Direct
PYP-like sensor domain (PAS domain)0.00009559Direct
Orange domain-like0.0001091Direct
SMAD MH1 domain0.0001376Direct
Zn-binding ribosomal proteins0.0005842Direct
HMG-box0.0009399Direct
gamma-Crystallin-like0.01471Inherited
Intermediate filament protein, coiled coil region0.03828Inherited
Immunoglobulin0.1227Inherited
Ras GEF0.1488Inherited
Fibronectin type III0.2589Inherited
Galactose-binding domain-like0.4598Inherited
Voltage-gated potassium channels0.4838Inherited
POZ domain1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    50044,50156
  • 50044 - SH3-domain
  • 50156 - PDZ domain-like
  • 0Direct
    48034,55931
  • 48034 - Guanido kinase N-terminal domain
  • 55931 - Glutamine synthetase/guanido kinase
  • 0Direct
    49899,48726
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 0Direct
    57184,49265
  • 57184 - Growth factor receptor domain
  • 49265 - Fibronectin type III
  • 0Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.0001091Direct
    47459,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0002721Direct
    55785,55785
  • 55785 - PYP-like sensor domain (PAS domain)
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0004318Direct
    52799,52799
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 0.01628Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.03828Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.06119Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.06127Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.07015Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49899,48726,49265
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0Direct
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.00002561Direct
    47459,55785,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0001091Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.03038Inherited
    57196,57196,49899
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.03405Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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