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Xenopus ANatomical entity (XAN): cranial neural crest

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   embryo [XAO:0000113] <8>(133|185) (135|87|37)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   primary germ layer [XAO:0003011] <4>(107|153) (108|71|29)
+ + + 3:   ectoderm [XAO:0000001] <15>(61|84) (61|42|11)
+ + + 3:   whole organism [XAO:0003004] <12>(463|595) (466|331|144)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|321|141)
+ + 2:   neuroectoderm [XAO:0000042] <9>(25|29) (26|14|5)
+ 1:   tissue [XAO:0003040] <186>(180|249) (187|128|57)
+ 1:   neural crest [XAO:0000048] <8>(10|14) (11|5|2)
0:   cranial neural crest [XAO:0001001] <3>(7|11) (7|4|1)
- 1:   branchial crest [XAO:0000026] <2>(3|4) (3|2|1)
- 1:   hyoid crest [XAO:0000025](4|4) (4|0|0)
- 1:   mandibular crest [XAO:0000024](1|1) (2|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0.0000000000001708Direct
Sema domain0.000007516Direct
Cytokine0.0000156Direct
"Winged helix" DNA-binding domain0.00005622Direct
Plexin repeat0.00008028Direct
HMG-box0.000144Direct
HLH, helix-loop-helix DNA-binding domain0.01108Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0.000000000007411Direct
Sema domain0.000002901Direct
Fibroblast growth factors (FGF)0.000009498Direct
Plexin repeat0.0001145Direct
HMG-box0.0001962Direct
Glutathione peroxidase-like0.0002627Direct
Paired domain0.0004789Direct
Arginine methyltransferase0.0004946Direct
P4 origin-binding domain-like0.001738Inherited
Ephrin receptor ligand binding domain0.002001Inherited
HLH, helix-loop-helix DNA-binding domain0.01468Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0.000000000000119Direct
Sema domain0.000005421Direct
Cytokine0.00001133Direct
"Winged helix" DNA-binding domain0.00004134Direct
Plexin repeat0.00005924Direct
HMG-box0.0001069Direct
HLH, helix-loop-helix DNA-binding domain0.008707Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.000005421Direct
    103575,48726
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.00004398Direct
    81383,52047
  • 81383 - F-box domain
  • 52047 - RNI-like
  • 0.0001807Direct
    56112,47769
  • 56112 - Protein kinase-like (PK-like)
  • 47769 - SAM/Pointed domain
  • 0.0007828Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    101912,103575,48726
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.00004398Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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