SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Xenopus ANatomical entity (XAN): neuron

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   anatomical group [XAO:0003001] <2>(418|530) (420|307|132)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + 2:   anatomical system [XAO:0003002] <19>(285|379) (290|203|91)
+ + 2:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   whole organism [XAO:0003004] <12>(463|595) (466|331|144)
+ 1:   nervous system [XAO:0000177] <11>(134|200) (140|112|51)
+ 1:   cell [XAO:0003012] <71>(92|101) (93|35|16)
0:   neuron [XAO:0003023] <19>(10|12) (11|3|1)
- 1:   interneuron [XAO:0004267] <6>(0|0) (0|0|0)
- 1:   neuron projection [XAO:0005317] <3>(2|3) (2|0|0)
- 1:   axon [XAO:0005015] <1>(2|2) (2|0|0)
- 1:   motor neuron [XAO:0004217] <1>(0|0) (0|0|0)
- 1:   Mauthner cell [XAO:0005035](0|0) (0|0|0)
- 1:   Rohon-Beard neuron [XAO:0003022](1|1) (1|0|0)
- 1:   afferent neuron [XAO:0005229](0|0) (0|0|0)
- 1:   dendrite [XAO:0005016](0|0) (0|0|0)
- 1:   dorsolateral ascending neuron [XAO:0005184](0|0) (0|0|0)
- 1:   dorsolateral commissural neuron [XAO:0005185](0|0) (0|0|0)
- 1:   efferent neuron [XAO:0005228](0|0) (0|0|0)
- 1:   enteric neuron [XAO:0004523](0|0) (0|0|0)
- 1:   growth cone [XAO:0005010](0|0) (0|0|0)
- 1:   horizontal cell [XAO:0004097](0|0) (0|0|0)
- 1:   intersomitic neuron [XAO:0004078](2|2) (2|1|0)
- 1:   mitral cell [XAO:0004573](0|0) (0|0|0)
- 1:   olfactory sensory neuron [XAO:0004527](1|2) (2|1|0)
- 1:   retinal ganglion cell [XAO:0004100](1|1) (1|0|0)
- 1:   spinal neuron [XAO:0005018](3|3) (3|1|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0.000000000003015Direct
Tubulin C-terminal domain-like0.000000002469Direct
Tubulin nucleotide-binding domain-like0.000000002469Direct
HLH, helix-loop-helix DNA-binding domain0.00000002845Direct
Intermediate filament protein, coiled coil region0.0000006218Direct
Voltage-gated potassium channels0.0001316Direct
lambda repressor-like DNA-binding domains0.0004339Direct
p53-like transcription factors0.0008698Direct
Transducin (alpha subunit), insertion domain0.00132Inherited
POZ domain0.03646Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0.0000000000005866Direct
Tubulin, C-terminal domain0.000000003816Direct
Tubulin, GTPase domain0.000000003816Direct
HLH, helix-loop-helix DNA-binding domain0.00000006473Direct
Intermediate filament protein, coiled coil region0.0000009543Direct
Tetramerization domain of potassium channels0.000007684Direct
Voltage-gated potassium channels0.00003776Direct
POU-specific domain0.00007409Direct
Paired domain0.0001193Direct
Enabled/VASP homology 1 domain (EVH1 domain)0.0009617Direct
Transducin (alpha subunit), insertion domain0.001386Inherited
G proteins0.6101Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0.000000000002103Direct
Tubulin C-terminal domain-like0.000000001732Direct
Tubulin nucleotide-binding domain-like0.000000001732Direct
HLH, helix-loop-helix DNA-binding domain0.00000002005Direct
Intermediate filament protein, coiled coil region0.0000004425Direct
Voltage-gated potassium channels0.00009761Direct
lambda repressor-like DNA-binding domains0.0003268Direct
p53-like transcription factors0.0006601Direct
Transducin (alpha subunit), insertion domain0.001008Inherited
POZ domain0.02957Inherited
P-loop containing nucleoside triphosphate hydrolases1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.000000001732Direct
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.00007686Direct
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.001008Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49899,49899,49899
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.0006328Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)