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Xenopus ANatomical entity (XAN): surface structure

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   whole organism [XAO:0003004] <12>(463|595) (466|331|144)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|321|141)
+ 1:   organism subdivision [XAO:0003013] <11>(378|498) (381|291|125)
0:   surface structure [XAO:0003028] <14>(23|28) (25|11|5)
- 1:   fin [XAO:0000002] <9>(9|8) (9|1|2)
- 1:   limb bud [XAO:0003161] <8>(4|5) (5|0|0)
- 1:   skin [XAO:0000023] <7>(11|14) (12|7|3)
- 1:   skin gland [XAO:0005071] <3>(0|0) (0|0|0)
- 1:   barbel [XAO:0004231](0|0) (0|0|0)
- 1:   cement gland [XAO:0000033](0|0) (0|0|0)
- 1:   cornea [XAO:0000180](0|0) (0|0|0)
- 1:   external gill [XAO:0000120](0|0) (0|0|0)
- 1:   fin crest [XAO:0004229](0|0) (0|0|0)
- 1:   lower eyelid [XAO:0000007](0|0) (0|0|0)
- 1:   proctodeum [XAO:0001019](0|0) (0|0|0)
- 1:   spiracle [XAO:0004232](0|0) (0|0|0)
- 1:   sulcus limitans of neural tube [XAO:0005070](0|0) (0|0|0)
- 1:   unicellular gland [XAO:0000470](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Nop domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
SIS domain0Direct
Homeodomain-like0.00002075Direct
"Winged helix" DNA-binding domain0.00006956Direct
Intermediate filament protein, coiled coil region0.0001627Direct
HLH, helix-loop-helix DNA-binding domain0.0001659Direct
SMAD MH1 domain0.0002106Direct
Cytokine0.0003152Direct
Tubulin C-terminal domain-like0.0005961Direct
Alpha-macroglobulin receptor domain0.0008628Direct
Tubulin nucleotide-binding domain-like0.001234Inherited
Orange domain-like0.002773Inherited
GroEL equatorial domain-like0.002773Inherited
GroEL-intermediate domain like0.004135Inherited
Plakin repeat0.004351Inherited
GroEL apical domain-like0.006949Inherited
Frizzled cysteine-rich domain0.03193Inherited
p53-like transcription factors0.06491Inherited
Growth factor receptor domain0.3852Inherited
EGF/Laminin0.4491Inherited
Family A G protein-coupled receptor-like1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Nop domain0Direct
Polo-box duplicated region0Direct
Ferritin0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Homeodomain0.000003565Direct
Fibroblast growth factors (FGF)0.0001212Direct
Glutathione S-transferase (GST), C-terminal domain0.0001212Direct
SMAD MH1 domain0.0002062Direct
Intermediate filament protein, coiled coil region0.0002195Direct
HLH, helix-loop-helix DNA-binding domain0.0002888Direct
Glutathione S-transferase (GST), N-terminal domain0.0003872Direct
VWC domain0.0003972Direct
Tubulin, C-terminal domain0.0006686Direct
Tubulin, GTPase domain0.0006686Direct
Glutathione peroxidase-like0.0007065Direct
Alpha-macroglobulin receptor domain0.0008224Direct
Hairy Orange domain0.002725Inherited
Proteasome subunits0.002738Inherited
Plakin repeat0.004177Inherited
T-box0.006086Inherited
Frizzled cysteine-rich domain0.03319Inherited
Multidrug efflux transporter AcrB transmembrane domain0.07197Inherited
Forkhead DNA-binding domain0.1226Inherited
Growth factor receptor domain0.1812Inherited
Transforming growth factor (TGF)-beta0.3853Inherited
Calmodulin-like0.4588Inherited
Rhodopsin-like1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
SIS domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Nop domain0Direct
14-3-3 protein0Direct
Homeodomain-like0.00001511Direct
"Winged helix" DNA-binding domain0.00005127Direct
Intermediate filament protein, coiled coil region0.0001211Direct
HLH, helix-loop-helix DNA-binding domain0.0001234Direct
SMAD MH1 domain0.0001572Direct
Cytokine0.0002365Direct
Tubulin C-terminal domain-like0.0004509Direct
Alpha-macroglobulin receptor domain0.0006547Direct
Tubulin nucleotide-binding domain-like0.0009419Direct
GroEL equatorial domain-like0.00214Inherited
Orange domain-like0.00214Inherited
GroEL-intermediate domain like0.003203Inherited
Plakin repeat0.003373Inherited
GroEL apical domain-like0.005435Inherited
BPTI-like0.007128Inherited
Frizzled cysteine-rich domain0.02573Inherited
p53-like transcription factors0.05376Inherited
Growth factor receptor domain0.3543Inherited
EGF/Laminin0.4157Inherited
Cystine-knot cytokines0.4274Inherited
Family A G protein-coupled receptor-like1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    82615,82615
  • 82615 - Polo-box domain
  • 82615 - Polo-box domain
  • 0Direct
    64593,64593
  • 64593 - Intermediate filament protein, coiled coil region
  • 64593 - Intermediate filament protein, coiled coil region
  • 0Direct
    52540,46785
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0001648Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.0004509Direct
    52833,47616
  • 52833 - Thioredoxin-like
  • 47616 - GST C-terminal domain-like
  • 0.001682Inherited
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.00214Inherited
    46966,47473
  • 46966 - Spectrin repeat
  • 47473 - EF-hand
  • 0.002637Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.003373Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.009974Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.00002211Direct
    46966,46966,47473
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 47473 - EF-hand
  • 0.002637Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.003373Inherited
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.01195Inherited
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.04089Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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