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Xenopus ANatomical entity (XAN): embryonic structure

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   Xenopus anatomical entity [XAO:0000000] <9>
+ 1:   embryo [XAO:0000113] <8>(133|186) (135|86|36)
+ 1:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ 1:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
0:   embryonic structure [XAO:0003042] <57>(42|55) (44|27|12)
- 1:   primordium [XAO:0003043] <20>(7|12) (9|2|0)
- 1:   foregut [XAO:0000232] <10>(8|8) (9|1|0)
- 1:   marginal zone [XAO:0000068] <8>(8|12) (8|7|3)
- 1:   neural tube [XAO:0003204] <7>(8|13) (8|2|2)
- 1:   lateral plate mesoderm [XAO:0000311] <6>(10|12) (10|3|1)
- 1:   visceral pouch [XAO:0000282] <6>(3|3) (3|0|0)
- 1:   optic vesicle [XAO:0000228] <4>(5|7) (6|2|1)
- 1:   vegetal yolk mass [XAO:0000281] <3>(3|5) (3|2|0)
- 1:   animal cap [XAO:0000036] <2>(1|1) (1|1|0)
- 1:   blastopore lip [XAO:0000078] <2>(3|5) (3|2|0)
- 1:   circumblastoporal collar [XAO:0000082] <2>(8|7) (8|2|1)
- 1:   hindgut [XAO:0000104] <2>(4|5) (4|0|0)
- 1:   anterior dorsal lateral plate region [XAO:0003051] <1>(4|5) (4|1|0)
- 1:   axial mesoderm [XAO:0000205] <1>(6|4) (6|0|0)
- 1:   blastopore [XAO:0000208] <1>(3|5) (3|2|0)
- 1:   cranial placode [XAO:0000305] <1>(15|15) (15|6|1)
- 1:   hatching gland [XAO:0000034] <1>(0|0) (0|0|0)
- 1:   paraxial mesoderm [XAO:0000259] <1>(5|9) (5|3|2)
- 1:   Brachet's cleft [XAO:0004456](0|0) (0|0|0)
- 1:   Rathke's pouch [XAO:0000430](0|0) (0|0|0)
- 1:   anterior foregut [XAO:0005127](0|0) (0|0|0)
- 1:   anterior neural tube [XAO:0000307](1|2) (1|0|0)
- 1:   cardiac mesoderm [XAO:0000235](2|4) (2|1|0)
- 1:   central vegetal yolk mass [XAO:0004395](0|0) (0|0|0)
- 1:   choroid fissure [XAO:0000474](0|0) (0|0|0)
- 1:   circumpharyngeal ridge [XAO:0004461](0|0) (0|0|0)
- 1:   cleavage furrow [XAO:0004492](0|0) (0|0|0)
- 1:   dorsal endoderm [XAO:0004462](0|0) (0|0|0)
- 1:   dorsal foregut [XAO:0005126](0|0) (0|0|0)
- 1:   dorsal lateral plate mesoderm [XAO:0004509](1|1) (1|0|0)
- 1:   dorsolateral neural tube [XAO:0004617](0|0) (0|0|0)
- 1:   endocardial tube [XAO:0000337](1|1) (1|0|0)
- 1:   glomeral mesenchyme [XAO:0000110](0|0) (0|0|0)
- 1:   hypobranchial placode [XAO:0000324](0|0) (0|0|0)
- 1:   lateral nasal prominence [XAO:0005193](0|0) (0|0|0)
- 1:   liver diverticulum [XAO:0000101](1|1) (2|0|0)
- 1:   lower blastopore lip [XAO:0000089](2|2) (2|0|0)
- 1:   medial nasal prominence [XAO:0005194](0|0) (0|0|0)
- 1:   midgut [XAO:0000103](3|3) (3|0|0)
- 1:   oral evagination [XAO:0000257](0|0) (0|0|0)
- 1:   peripheral vegetal yolk mass [XAO:0004384](0|0) (0|0|0)
- 1:   posterior foregut [XAO:0005128](0|0) (0|0|0)
- 1:   posterior neural tube [XAO:0000250](1|2) (1|1|0)
- 1:   prechordal plate [XAO:0000079](4|3) (4|0|0)
- 1:   presumptive axial mesoderm [XAO:0004406](0|0) (0|0|0)
- 1:   presumptive ectoderm [XAO:0004132](0|0) (0|0|0)
- 1:   presumptive midbrain-hindbrain boundary [XAO:0004086](5|5) (5|2|0)
- 1:   presumptive paraxial mesoderm [XAO:0004134](1|2) (1|0|0)
- 1:   presumptive rhombomere [XAO:0005026](2|2) (2|1|0)
- 1:   somatic layer of lateral plate mesoderm [XAO:0000271](0|0) (0|0|0)
- 1:   splanchnic layer of lateral plate mesoderm [XAO:0000276](1|1) (1|1|1)
- 1:   trunk placode [XAO:0000461](0|0) (0|0|0)
- 1:   upper blastopore lip [XAO:0000088](1|3) (1|2|0)
- 1:   vegetal endoderm [XAO:0004066](1|1) (1|0|0)
- 1:   ventral foregut [XAO:0005125](0|0) (0|0|0)
- 1:   ventral mesoderm [XAO:0004473](2|2) (2|0|0)
- 1:   ventrolateral neural tube [XAO:0004616](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Synuclein0Direct
LysM domain0Direct
Hedgehog/DD-peptidase0Direct
14-3-3 protein0Direct
PLP-binding barrel0Direct
Cysteine-rich DNA binding domain, (DM domain)0Direct
Homeodomain-like0Direct
Guanido kinase N-terminal domain0Direct
Alanine racemase C-terminal domain-like0Direct
SRF-like0Direct
PriA/YqbF domain0Direct
GINS helical bundle-like0Direct
"Winged helix" DNA-binding domain0.00000000000001726Direct
HLH, helix-loop-helix DNA-binding domain0.0000000000000408Direct
RNA-binding domain, RBD0.00000000004547Direct
Cytokine0.0000003321Direct
Frizzled cysteine-rich domain0.000001033Direct
HMG-box0.0000393Direct
Cystine-knot cytokines0.0002142Direct
Glucocorticoid receptor-like (DNA-binding domain)0.0003801Direct
Sema domain0.0007951Direct
Snake toxin-like0.002914Inherited
p53-like transcription factors0.003595Inherited
Orange domain-like0.004152Inherited
GroEL-intermediate domain like0.004152Inherited
GroEL equatorial domain-like0.004152Inherited
GroEL apical domain-like0.01315Inherited
Plexin repeat0.01379Inherited
lambda repressor-like DNA-binding domains0.02511Inherited
Transducin (alpha subunit), insertion domain0.09595Inherited
beta-beta-alpha zinc fingers0.116Inherited
TIMP-like0.1266Inherited
Mannose 6-phosphate receptor domain0.2024Inherited
Alpha-macroglobulin receptor domain0.2257Inherited
Globin-like0.258Inherited
EGF/Laminin0.27Inherited
FnI-like domain0.2754Inherited
Kazal-type serine protease inhibitors0.2878Inherited
Tropomyosin0.3291Inherited
DNA-binding domain0.3877Inherited
LDL receptor-like module0.5569Inherited
Terpenoid cyclases/Protein prenyltransferases0.5757Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Guanido kinase N-terminal domain0Direct
14-3-3 protein0Direct
Noggin0Direct
Alanine racemase-like, N-terminal domain0Direct
Ran-binding domain0Direct
Troponin I0Direct
Homeodomain0Direct
Extracellular domain of cell surface receptors0Direct
Synuclein0Direct
Fibroblast growth factors (FGF)0Direct
SH3BGR (SH3-binding, glutamic acid-rich protein-like)0Direct
Guanido kinase catalytic domain0Direct
Pointed domain0Direct
Eukaryotic ODC-like0Direct
Cysteine-rich DNA binding domain, (DM domain)0Direct
LysM domain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
SRF-like0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
HLH, helix-loop-helix DNA-binding domain0.0000000000002192Direct
Forkhead DNA-binding domain0.00000000000105Direct
Canonical RBD0.00000000001897Direct
ets domain0.00000004908Direct
Transforming growth factor (TGF)-beta0.000001376Direct
Frizzled cysteine-rich domain0.000001425Direct
HMG-box0.00006453Direct
Sema domain0.0003881Direct
T-box0.0004227Direct
POU-specific domain0.001043Inherited
LIM domain0.003562Inherited
Hairy Orange domain0.004206Inherited
Cell cycle control phosphatase, catalytic domain0.005714Inherited
P4 origin-binding domain-like0.005714Inherited
Group II chaperonin (CCT, TRIC), apical domain0.01036Inherited
Group II chaperonin (CCT, TRIC), intermediate domain0.01543Inherited
Plexin repeat0.01662Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.0245Inherited
Erythroid transcription factor GATA-10.0245Inherited
Eukaryotic type KH-domain (KH-domain type I)0.02488Inherited
VWC domain0.031Inherited
Glutathione peroxidase-like0.05915Inherited
Paired domain0.0606Inherited
Tandem AAA-ATPase domain0.07758Inherited
Transducin (alpha subunit), insertion domain0.09829Inherited
Classic zinc finger, C2H20.1115Inherited
Class I aldolase0.1195Inherited
Tropomyosin0.1908Inherited
Mannose 6-phosphate receptor domain0.2025Inherited
Arginine methyltransferase0.2234Inherited
Alpha-macroglobulin receptor domain0.2234Inherited
Globins0.2593Inherited
Complement components0.3342Inherited
LDL receptor-like module0.5821Inherited
I set domains0.7419Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PriA/YqbF domain0Direct
SRF-like0Direct
PLP-binding barrel0Direct
Homeodomain-like0Direct
Synuclein0Direct
14-3-3 protein0Direct
Cysteine-rich DNA binding domain, (DM domain)0Direct
Alanine racemase C-terminal domain-like0Direct
Guanido kinase N-terminal domain0Direct
LysM domain0Direct
GINS helical bundle-like0Direct
Hedgehog/DD-peptidase0Direct
"Winged helix" DNA-binding domain0.00000000000001187Direct
HLH, helix-loop-helix DNA-binding domain0.00000000000002805Direct
RNA-binding domain, RBD0.00000000003145Direct
Cytokine0.0000002334Direct
Frizzled cysteine-rich domain0.0000007289Direct
HMG-box0.00002856Direct
Cystine-knot cytokines0.0001585Direct
Glucocorticoid receptor-like (DNA-binding domain)0.0002836Direct
Sema domain0.0005983Direct
Snake toxin-like0.002235Inherited
p53-like transcription factors0.002757Inherited
GroEL-intermediate domain like0.003195Inherited
Orange domain-like0.003195Inherited
GroEL equatorial domain-like0.003195Inherited
GroEL apical domain-like0.01034Inherited
Plexin repeat0.01085Inherited
lambda repressor-like DNA-binding domains0.02002Inherited
Transducin (alpha subunit), insertion domain0.08108Inherited
beta-beta-alpha zinc fingers0.09924Inherited
TIMP-like0.1091Inherited
F-box domain0.14Inherited
Mannose 6-phosphate receptor domain0.1788Inherited
Alpha-macroglobulin receptor domain0.2009Inherited
Globin-like0.2311Inherited
EGF/Laminin0.2426Inherited
FnI-like domain0.2477Inherited
Kazal-type serine protease inhibitors0.2594Inherited
Tropomyosin0.2992Inherited
DNA-binding domain0.3561Inherited
LDL receptor-like module0.52Inherited
Terpenoid cyclases/Protein prenyltransferases0.5386Inherited
E set domains0.9058Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    53223,51735
  • 53223 - Aminoacid dehydrogenase-like, N-terminal domain
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 0Direct
    54534,54534
  • 54534 - FKBP-like
  • 54534 - FKBP-like
  • 0Direct
    63501,50242
  • 63501 - Frizzled cysteine-rich domain
  • 50242 - TIMP-like
  • 0Direct
    49899,48726
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 0Direct
    48034,55931
  • 48034 - Guanido kinase N-terminal domain
  • 55931 - Glutamine synthetase/guanido kinase
  • 0Direct
    103647,103647
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 0Direct
    47095,47095
  • 47095 - HMG-box
  • 47095 - HMG-box
  • 0Direct
    51419,50621
  • 51419 - PLP-binding barrel
  • 50621 - Alanine racemase C-terminal domain-like
  • 0Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0000002729Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.00002758Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.0005983Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.0005983Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.003195Inherited
    90209,90209
  • 90209 - Ran binding protein zinc finger-like
  • 90209 - Ran binding protein zinc finger-like
  • 0.01287Inherited
    103575,48726
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.02016Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.02308Inherited
    54791,54791
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 0.0407Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.05917Inherited
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.06492Inherited
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.08108Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.1011Inherited
    57850,49599
  • 57850 - RING/U-box
  • 49599 - TRAF domain-like
  • 0.1044Inherited
    57196,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.1091Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.1729Inherited
    57184,57184
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.471Inherited
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.4993Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    103647,103647,103647
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 0Direct
    47220,47220,47220
  • 47220 - alpha-catenin/vinculin-like
  • 47220 - alpha-catenin/vinculin-like
  • 47220 - alpha-catenin/vinculin-like
  • 0Direct
    103647,103647,49899
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0Direct
    49899,48726,49265
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0Direct
    57603,57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.004597Inherited
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.01034Inherited
    101912,103575,48726
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.02016Inherited
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.05041Inherited
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.05087Inherited
    48726,49265,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.1044Inherited
    57196,57184,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.1055Inherited
    57667,57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.9501Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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