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Xenopus ANatomical entity (XAN): skeletal system

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   whole organism [XAO:0003004] <12>(463|595) (466|331|144)
+ + 2:   anatomical group [XAO:0003001] <2>(418|530) (420|307|132)
+ 1:   musculoskeletal system [XAO:0000168] <2>(43|60) (46|26|15)
+ 1:   anatomical system [XAO:0003002] <19>(285|379) (290|203|91)
0:   skeletal system [XAO:0003060] <3>(16|18) (17|7|4)
- 1:   cranium [XAO:0003075] <14>(5|9) (5|3|1)
- 1:   skeleton [XAO:0004053] <3>(12|9) (13|4|2)
- 1:   articular system [XAO:0004274] <1>(0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Subunits of heterodimeric actin filament capping protein Capz0Direct
Mitochondrial cytochrome c oxidase subunit VIIa0Direct
F1F0 ATP synthase subunit C0Direct
Zn-binding ribosomal proteins0.00044Direct
Translation proteins SH3-like domain0.001053Inherited
Actin depolymerizing proteins0.00116Inherited
Thioredoxin-like0.001423Inherited
LDH C-terminal domain-like0.001986Inherited
Spectrin repeat0.004017Inherited
Annexin0.005185Inherited
p53-like transcription factors0.02915Inherited
Homeodomain-like0.04016Inherited
HMG-box0.0496Inherited
Cytokine0.1818Inherited
HLH, helix-loop-helix DNA-binding domain0.3518Inherited
Cystine-knot cytokines0.9594Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
DJ-1/PfpI0Direct
RUNT domain0Direct
Mitochondrial cytochrome c oxidase subunit VIIa0Direct
F1F0 ATP synthase subunit C0Direct
LIM domain0.0004187Direct
Canonical RBD0.0009317Direct
Linker histone H1/H50.002051Inherited
LDH N-terminal domain-like0.002051Inherited
Lactate & malate dehydrogenases, C-terminal domain0.002051Inherited
Glutathione peroxidase-like0.002907Inherited
Spectrin repeat0.004845Inherited
Homeodomain0.0459Inherited
Paired domain0.04633Inherited
HMG-box0.06485Inherited
Extracellular domain of cell surface receptors0.06607Inherited
Fibroblast growth factors (FGF)0.1522Inherited
Forkhead DNA-binding domain0.2262Inherited
HLH, helix-loop-helix DNA-binding domain0.438Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
F1F0 ATP synthase subunit C0Direct
Mitochondrial cytochrome c oxidase subunit VIIa0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
Zn-binding ribosomal proteins0.0003314Direct
Translation proteins SH3-like domain0.0008015Direct
Actin depolymerizing proteins0.0008846Direct
Thioredoxin-like0.001088Inherited
LDH C-terminal domain-like0.001525Inherited
Spectrin repeat0.003109Inherited
Annexin0.004031Inherited
UBC-like0.01603Inherited
p53-like transcription factors0.02345Inherited
Homeodomain-like0.03277Inherited
HMG-box0.04075Inherited
Cytokine0.1595Inherited
HLH, helix-loop-helix DNA-binding domain0.3215Inherited
Cystine-knot cytokines0.9324Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0005346Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.0008846Direct
    47095,47095
  • 47095 - HMG-box
  • 47095 - HMG-box
  • 0.001525Inherited
    51735,56327
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 56327 - LDH C-terminal domain-like
  • 0.001525Inherited
    46966,47473
  • 46966 - Spectrin repeat
  • 47473 - EF-hand
  • 0.001525Inherited
    48726,56436
  • 48726 - Immunoglobulin
  • 56436 - C-type lectin-like
  • 0.006706Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.9785Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0005178Direct
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.0008873Direct
    46966,46966,47473
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 47473 - EF-hand
  • 0.001525Inherited
    48726,56436,56436
  • 48726 - Immunoglobulin
  • 56436 - C-type lectin-like
  • 56436 - C-type lectin-like
  • 0.006706Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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