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Xenopus ANatomical entity (XAN): anatomical space

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ 1:   Xenopus anatomical entity [XAO:0000000] <9>
+ 1:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
0:   anatomical space [XAO:0003190] <22>(17|22) (18|9|5)
- 1:   archenteron [XAO:0000092] <3>(4|5) (4|2|0)
- 1:   brain ventricle [XAO:0004602] <3>(0|0) (0|0|0)
- 1:   blastocoel [XAO:0000294] <2>(1|1) (1|0|0)
- 1:   mouth [XAO:0003029] <2>(1|1) (1|0|0)
- 1:   olfactory pit [XAO:0000275] <2>(0|0) (0|0|0)
- 1:   coelom [XAO:0004521] <1>(12|16) (12|5|4)
- 1:   filter chamber [XAO:0000439] <1>(0|0) (0|0|0)
- 1:   choana [XAO:0000277](0|0) (0|0|0)
- 1:   dorsal lymph space [XAO:0000374](0|0) (0|0|0)
- 1:   fenestra basicranialis [XAO:0004365](0|0) (0|0|0)
- 1:   fenestra subocularis [XAO:0004367](0|0) (0|0|0)
- 1:   medium cavity [XAO:0004525](0|0) (0|0|0)
- 1:   mesonephric sinus [XAO:0000381](0|0) (0|0|0)
- 1:   myocoelic slit [XAO:0000246](0|0) (0|0|0)
- 1:   neurocoel [XAO:0000252](0|0) (0|0|0)
- 1:   nostril [XAO:0003033](0|0) (0|0|0)
- 1:   oral cavity [XAO:0000126](0|0) (0|0|0)
- 1:   oval window [XAO:0005146](0|0) (0|0|0)
- 1:   pharyngeal cavity [XAO:0000105](0|0) (0|0|0)
- 1:   principal cavity [XAO:0004526](0|0) (0|0|0)
- 1:   pronephric sinus [XAO:0000385](0|0) (0|0|0)
- 1:   pupil [XAO:0000283](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Nop domain0Direct
Homeodomain-like0Direct
Transducin (alpha subunit), insertion domain0.0000000000005635Direct
HLH, helix-loop-helix DNA-binding domain0.0000000001045Direct
Frizzled cysteine-rich domain0.00003869Direct
Growth factor receptor domain0.0000492Direct
Cystine-knot cytokines0.00006575Direct
14-3-3 protein0.0003004Direct
Orange domain-like0.0003443Direct
Glucocorticoid receptor-like (DNA-binding domain)0.002447Inherited
ARID-like0.0119Inherited
Clavaminate synthase-like0.08325Inherited
Tubulin C-terminal domain-like0.08684Inherited
Tubulin nucleotide-binding domain-like0.1033Inherited
lambda repressor-like DNA-binding domains0.1033Inherited
HMG-box0.1405Inherited
Thioredoxin-like0.4063Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Nop domain0Direct
Homeodomain0Direct
Transducin (alpha subunit), insertion domain0.0000000000008059Direct
HLH, helix-loop-helix DNA-binding domain0.0000000002994Direct
Transforming growth factor (TGF)-beta0.000002291Direct
Frizzled cysteine-rich domain0.00004553Direct
Growth factor receptor domain0.00007016Direct
ets domain0.00007039Direct
14-3-3 protein0.0002901Direct
L domain0.0002901Direct
Hairy Orange domain0.0003473Direct
Class I aldolase0.0008954Direct
Erythroid transcription factor GATA-10.0008954Direct
Forkhead DNA-binding domain0.002173Inherited
Glutathione peroxidase-like0.002665Inherited
Hypoxia-inducible factor Hif2a, C-terminal domain0.002665Inherited
ARID domain0.01161Inherited
POU-specific domain0.02479Inherited
AAT-like0.03026Inherited
Tubulin, C-terminal domain0.08645Inherited
Tubulin, GTPase domain0.08645Inherited
HMG-box0.15Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0Direct
Nop domain0Direct
Transducin (alpha subunit), insertion domain0.0000000000003881Direct
HLH, helix-loop-helix DNA-binding domain0.0000000000723Direct
Frizzled cysteine-rich domain0.00002811Direct
Growth factor receptor domain0.0000358Direct
Cystine-knot cytokines0.00004802Direct
14-3-3 protein0.0002234Direct
Orange domain-like0.0002566Direct
"Winged helix" DNA-binding domain0.0008034Direct
Glucocorticoid receptor-like (DNA-binding domain)0.001873Inherited
ARID-like0.009323Inherited
Clavaminate synthase-like0.06956Inherited
Tubulin C-terminal domain-like0.07273Inherited
lambda repressor-like DNA-binding domains0.0876Inherited
Tubulin nucleotide-binding domain-like0.0876Inherited
HMG-box0.1219Inherited
Thioredoxin-like0.3748Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
50044,50156
  • 50044 - SH3-domain
  • 50156 - PDZ domain-like
  • 0Direct
    52058,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0000000000003881Direct
    52058,57184
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0.0002234Direct
    57184,52058
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.0002234Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.0002566Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0009295Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.07273Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.1284Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    52058,49265,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0Direct
    57184,52058,49265
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    52058,57184,52058
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.00004187Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.0005747Direct
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.001648Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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